Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
CHMP1AQ9HD42 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CHMP1AQ9HD42 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 VMO1-204ENST00000441199 741 ntTSL 2 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 AC087633.2-202ENST00000565166 1439 ntBASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.84■□□□□ 0.29
CHMP1AQ9HD42 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CHMP1AQ9HD42 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CHMP1AQ9HD42 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CHMP1AQ9HD42 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.83■□□□□ 0.29
CHMP1AQ9HD42 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms