Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
VCX3BQ9H321 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3BQ9H321 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
VCX3BQ9H321 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.68■□□□□ 0.58
VCX3BQ9H321 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.68■□□□□ 0.58
VCX3BQ9H321 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.68■□□□□ 0.58
VCX3BQ9H321 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VCX3BQ9H321 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.67■□□□□ 0.58
VCX3BQ9H321 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
VCX3BQ9H321 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
VCX3BQ9H321 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VCX3BQ9H321 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.67■□□□□ 0.58
VCX3BQ9H321 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.67■□□□□ 0.58
VCX3BQ9H321 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
VCX3BQ9H321 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VCX3BQ9H321 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3BQ9H321 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 SMUG1P1-201ENST00000590640 811 ntBASIC18.66■□□□□ 0.58
VCX3BQ9H321 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.66■□□□□ 0.58
VCX3BQ9H321 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 AC106820.2-201ENST00000563775 3264 ntBASIC18.66■□□□□ 0.58
VCX3BQ9H321 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VCX3BQ9H321 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 PRORSD1P-202ENST00000563365 2154 ntBASIC18.65■□□□□ 0.58
VCX3BQ9H321 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 AL354751.1-201ENST00000412768 1863 ntBASIC18.65■□□□□ 0.58
VCX3BQ9H321 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 BICD1-207ENST00000551848 1962 ntBASIC18.65■□□□□ 0.58
VCX3BQ9H321 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 AC004987.1-201ENST00000428627 508 ntBASIC18.65■□□□□ 0.58
VCX3BQ9H321 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
VCX3BQ9H321 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VCX3BQ9H321 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VCX3BQ9H321 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VCX3BQ9H321 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
VCX3BQ9H321 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VCX3BQ9H321 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCX3BQ9H321 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCX3BQ9H321 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.64■□□□□ 0.57
VCX3BQ9H321 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
VCX3BQ9H321 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.64■□□□□ 0.57
VCX3BQ9H321 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms