Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.26■□□□□ 0.35
MMP28Q9H239 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.26■□□□□ 0.35
MMP28Q9H239 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
MMP28Q9H239 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.26■□□□□ 0.35
MMP28Q9H239 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.26■□□□□ 0.35
MMP28Q9H239 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MMP28Q9H239 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.26■□□□□ 0.35
MMP28Q9H239 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MMP28Q9H239 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MMP28Q9H239 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.26■□□□□ 0.35
MMP28Q9H239 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
MMP28Q9H239 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MMP28Q9H239 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.25■□□□□ 0.35
MMP28Q9H239 TERF1P2-201ENST00000583350 1212 ntBASIC17.25■□□□□ 0.35
MMP28Q9H239 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.25■□□□□ 0.35
MMP28Q9H239 IKBKGP1-201ENST00000612193 1073 ntBASIC17.25■□□□□ 0.35
MMP28Q9H239 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.25■□□□□ 0.35
MMP28Q9H239 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MMP28Q9H239 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MMP28Q9H239 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.25■□□□□ 0.35
MMP28Q9H239 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.25■□□□□ 0.35
MMP28Q9H239 KRT87P-202ENST00000534226 1464 ntBASIC17.24■□□□□ 0.35
MMP28Q9H239 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MMP28Q9H239 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
MMP28Q9H239 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.24■□□□□ 0.35
MMP28Q9H239 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MMP28Q9H239 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.24■□□□□ 0.35
MMP28Q9H239 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.24■□□□□ 0.35
MMP28Q9H239 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
MMP28Q9H239 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.24■□□□□ 0.35
MMP28Q9H239 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
MMP28Q9H239 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC17.24■□□□□ 0.35
MMP28Q9H239 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.24■□□□□ 0.35
MMP28Q9H239 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.24■□□□□ 0.35
MMP28Q9H239 CCDC92B-201ENST00000575506 885 ntBASIC17.24■□□□□ 0.35
MMP28Q9H239 AC022517.1-201ENST00000592429 346 ntBASIC17.24■□□□□ 0.35
MMP28Q9H239 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.24■□□□□ 0.35
MMP28Q9H239 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.24■□□□□ 0.35
MMP28Q9H239 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.24■□□□□ 0.35
MMP28Q9H239 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MMP28Q9H239 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.23■□□□□ 0.35
MMP28Q9H239 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.23■□□□□ 0.35
MMP28Q9H239 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.23■□□□□ 0.35
MMP28Q9H239 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.23■□□□□ 0.35
MMP28Q9H239 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.23■□□□□ 0.35
MMP28Q9H239 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.23■□□□□ 0.35
MMP28Q9H239 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 KRT18P5-201ENST00000436075 1291 ntBASIC17.23■□□□□ 0.35
MMP28Q9H239 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.23■□□□□ 0.35
MMP28Q9H239 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC17.23■□□□□ 0.35
MMP28Q9H239 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 KRT18P14-201ENST00000534205 1250 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms