Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 C1QL1P1-201ENST00000568105 661 ntBASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAIPQ9BWF2 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 AC073314.1-201ENST00000568729 2216 ntBASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 REXO1L10P-201ENST00000615707 1290 ntBASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 AC133561.5-201ENST00000635547 218 ntBASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAIPQ9BWF2 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 MMP23A-201ENST00000234610 1017 ntBASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 YBX1P10-201ENST00000444752 975 ntBASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 AC018553.1-201ENST00000616682 1458 ntBASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAIPQ9BWF2 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 RBM17P1-201ENST00000453646 1190 ntBASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 KRT18P16-201ENST00000510337 1294 ntBASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
TRAIPQ9BWF2 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 KRT16P1-201ENST00000399124 1418 ntBASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 AL445675.2-201ENST00000620291 557 ntBASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.47■■□□□ 1.03
TRAIPQ9BWF2 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRAIPQ9BWF2 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms