Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 AC007613.1-201ENST00000572811 2597 ntBASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 PHGDH-210ENST00000641115 1638 ntBASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.07■□□□□ 0.64
CCDC28BQ9BUN5 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 HLA-G-202ENST00000376815 851 ntBASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 HLA-G-203ENST00000376818 1127 ntBASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC28BQ9BUN5 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC28BQ9BUN5 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms