Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
IFT140Q96RY7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC32.74■■■□□ 2.83
IFT140Q96RY7 AC104692.2-201ENST00000603054 253 ntBASIC32.74■■■□□ 2.83
IFT140Q96RY7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC32.73■■■□□ 2.83
IFT140Q96RY7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
IFT140Q96RY7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC32.73■■■□□ 2.83
IFT140Q96RY7 PHGDH-210ENST00000641115 1638 ntBASIC32.73■■■□□ 2.83
IFT140Q96RY7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
IFT140Q96RY7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC32.73■■■□□ 2.83
IFT140Q96RY7 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC32.73■■■□□ 2.83
IFT140Q96RY7 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC32.73■■■□□ 2.83
IFT140Q96RY7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
IFT140Q96RY7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
IFT140Q96RY7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC32.72■■■□□ 2.83
IFT140Q96RY7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
IFT140Q96RY7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC32.72■■■□□ 2.83
IFT140Q96RY7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
IFT140Q96RY7 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
IFT140Q96RY7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC32.71■■■□□ 2.83
IFT140Q96RY7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
IFT140Q96RY7 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
IFT140Q96RY7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC32.71■■■□□ 2.83
IFT140Q96RY7 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC32.71■■■□□ 2.83
IFT140Q96RY7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC32.71■■■□□ 2.83
IFT140Q96RY7 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
IFT140Q96RY7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC32.71■■■□□ 2.83
IFT140Q96RY7 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC32.71■■■□□ 2.83
IFT140Q96RY7 KRT16P6-202ENST00000425692 1426 ntBASIC32.71■■■□□ 2.83
IFT140Q96RY7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
IFT140Q96RY7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC32.7■■■□□ 2.83
IFT140Q96RY7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 AP002383.4-201ENST00000442518 975 ntBASIC32.7■■■□□ 2.83
IFT140Q96RY7 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 AL121603.2-201ENST00000557373 2117 ntBASIC32.7■■■□□ 2.83
IFT140Q96RY7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 TBCB-205ENST00000585746 875 ntTSL 3 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.83
IFT140Q96RY7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC32.7■■■□□ 2.83
IFT140Q96RY7 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC32.69■■■□□ 2.82
IFT140Q96RY7 TSSC2-201ENST00000450217 709 ntBASIC32.69■■■□□ 2.82
IFT140Q96RY7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC32.69■■■□□ 2.82
IFT140Q96RY7 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC32.69■■■□□ 2.82
IFT140Q96RY7 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC32.69■■■□□ 2.82
IFT140Q96RY7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC32.69■■■□□ 2.82
IFT140Q96RY7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC32.68■■■□□ 2.82
IFT140Q96RY7 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC32.68■■■□□ 2.82
IFT140Q96RY7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC32.68■■■□□ 2.82
IFT140Q96RY7 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC32.68■■■□□ 2.82
IFT140Q96RY7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC32.68■■■□□ 2.82
IFT140Q96RY7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
IFT140Q96RY7 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
IFT140Q96RY7 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
IFT140Q96RY7 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
IFT140Q96RY7 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC32.67■■■□□ 2.82
IFT140Q96RY7 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC32.67■■■□□ 2.82
IFT140Q96RY7 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
IFT140Q96RY7 KRT18P1-202ENST00000452408 1331 ntBASIC32.67■■■□□ 2.82
IFT140Q96RY7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC32.67■■■□□ 2.82
IFT140Q96RY7 TMEM179-206ENST00000616017 1645 ntBASIC32.67■■■□□ 2.82
IFT140Q96RY7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC32.67■■■□□ 2.82
IFT140Q96RY7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC32.67■■■□□ 2.82
IFT140Q96RY7 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
IFT140Q96RY7 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
IFT140Q96RY7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC32.67■■■□□ 2.82
IFT140Q96RY7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
IFT140Q96RY7 AL671883.3-201ENST00000603274 991 ntBASIC32.67■■■□□ 2.82
IFT140Q96RY7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
IFT140Q96RY7 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
IFT140Q96RY7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
IFT140Q96RY7 AC005229.4-201ENST00000610085 2198 ntBASIC32.66■■■□□ 2.82
IFT140Q96RY7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC32.66■■■□□ 2.82
IFT140Q96RY7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC32.66■■■□□ 2.82
IFT140Q96RY7 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC32.66■■■□□ 2.82
IFT140Q96RY7 AC106795.1-205ENST00000512851 1056 ntBASIC32.66■■■□□ 2.82
IFT140Q96RY7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
IFT140Q96RY7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC32.66■■■□□ 2.82
IFT140Q96RY7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
IFT140Q96RY7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC32.66■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms