Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.76■□□□□ 0.59
VMP1Q96GC9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 AL390719.1-204ENST00000412397 1219 ntBASIC18.75■□□□□ 0.59
VMP1Q96GC9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 AC026366.1-201ENST00000488803 879 ntBASIC18.75■□□□□ 0.59
VMP1Q96GC9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VMP1Q96GC9 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.75■□□□□ 0.59
VMP1Q96GC9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 TNXA-203ENST00000507684 2038 ntBASIC18.74■□□□□ 0.59
VMP1Q96GC9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 AC005829.2-201ENST00000571422 1056 ntBASIC18.74■□□□□ 0.59
VMP1Q96GC9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VMP1Q96GC9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.74■□□□□ 0.59
VMP1Q96GC9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.73■□□□□ 0.59
VMP1Q96GC9 UNC93B4-201ENST00000505679 747 ntBASIC18.73■□□□□ 0.59
VMP1Q96GC9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 SOX15-203ENST00000570788 1093 ntBASIC18.73■□□□□ 0.59
VMP1Q96GC9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.73■□□□□ 0.59
VMP1Q96GC9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VMP1Q96GC9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms