Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC113347.1-201ENST00000413321 391 ntBASIC19.15■□□□□ 0.66
LMX1AQ8TE12 KRT18P57-201ENST00000443599 1254 ntBASIC19.15■□□□□ 0.66
LMX1AQ8TE12 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 AC007375.3-201ENST00000600936 2314 ntBASIC19.15■□□□□ 0.66
LMX1AQ8TE12 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LMX1AQ8TE12 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LMX1AQ8TE12 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LMX1AQ8TE12 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 CRYGFP-201ENST00000418459 633 ntBASIC19.14■□□□□ 0.65
LMX1AQ8TE12 AL137013.1-201ENST00000432946 1228 ntBASIC19.14■□□□□ 0.65
LMX1AQ8TE12 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 AC097488.1-201ENST00000507834 756 ntBASIC19.14■□□□□ 0.65
LMX1AQ8TE12 DGCR10-201ENST00000609839 495 ntBASIC19.14■□□□□ 0.65
LMX1AQ8TE12 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.14■□□□□ 0.65
LMX1AQ8TE12 TMEM179-206ENST00000616017 1645 ntBASIC19.14■□□□□ 0.65
LMX1AQ8TE12 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 C2orf69P3-201ENST00000565542 1120 ntBASIC19.13■□□□□ 0.65
LMX1AQ8TE12 AL049597.2-201ENST00000565575 961 ntBASIC19.13■□□□□ 0.65
LMX1AQ8TE12 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 HLA-A-209ENST00000638375 975 ntBASIC19.13■□□□□ 0.65
LMX1AQ8TE12 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LMX1AQ8TE12 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 AC020907.5-201ENST00000624372 1936 ntBASIC19.12■□□□□ 0.65
LMX1AQ8TE12 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 SLC25A3P1-201ENST00000443844 931 ntBASIC19.12■□□□□ 0.65
LMX1AQ8TE12 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 SLC25A1P4-201ENST00000567977 778 ntBASIC19.12■□□□□ 0.65
LMX1AQ8TE12 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
LMX1AQ8TE12 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.11■□□□□ 0.65
LMX1AQ8TE12 AP005242.2-201ENST00000580065 1175 ntBASIC19.11■□□□□ 0.65
LMX1AQ8TE12 AL445228.2-201ENST00000605589 952 ntBASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms