Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 AC245052.3-201ENST00000450182 901 ntBASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
ZNF540Q8NDQ6 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 POU5F1P4-201ENST00000413175 1085 ntBASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 AC026185.1-201ENST00000445748 174 ntBASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF540Q8NDQ6 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF540Q8NDQ6 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 KRT8P36-201ENST00000489121 1440 ntBASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 KRT87P-202ENST00000534226 1464 ntBASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF540Q8NDQ6 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms