Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 AL031985.4-201ENST00000642138 673 ntBASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.71■□□□□ 0.75
HDDC3Q8N4P3 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 KRT8P9-201ENST00000558927 1449 ntBASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 AL445675.2-201ENST00000620291 557 ntBASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HDDC3Q8N4P3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 AC073314.1-201ENST00000568729 2216 ntBASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.69■□□□□ 0.74
HDDC3Q8N4P3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 TERF1P1-201ENST00000311003 1181 ntBASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 AC087388.1-201ENST00000571370 1112 ntBASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HDDC3Q8N4P3 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 AL390955.1-201ENST00000428694 934 ntBASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HDDC3Q8N4P3 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HDDC3Q8N4P3 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms