Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 POM121L13P-201ENST00000422362 380 ntBASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 AC008403.3-201ENST00000598924 454 ntBASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 AIRN-201ENST00000601203 4374 ntBASIC21.78■■□□□ 1.08
CCDC65Q8IXS2 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 AP006587.1-201ENST00000534129 1502 ntBASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 AP003097.1-201ENST00000530657 1135 ntBASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CCDC65Q8IXS2 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC65Q8IXS2 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CCDC65Q8IXS2 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 AC026366.1-201ENST00000488803 879 ntBASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC65Q8IXS2 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms