Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 KRT18P29-201ENST00000397031 1267 ntBASIC19.2■□□□□ 0.66
VRK3Q8IV63 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 KRASP1-201ENST00000407852 552 ntBASIC19.2■□□□□ 0.66
VRK3Q8IV63 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 PRKY-204ENST00000533551 1019 ntBASIC19.2■□□□□ 0.66
VRK3Q8IV63 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.2■□□□□ 0.66
VRK3Q8IV63 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VRK3Q8IV63 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VRK3Q8IV63 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VRK3Q8IV63 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VRK3Q8IV63 YBX1P10-201ENST00000444752 975 ntBASIC19.19■□□□□ 0.66
VRK3Q8IV63 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 AC124016.1-201ENST00000609552 612 ntBASIC19.19■□□□□ 0.66
VRK3Q8IV63 NBPF21P-201ENST00000425093 1451 ntBASIC19.19■□□□□ 0.66
VRK3Q8IV63 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VRK3Q8IV63 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VRK3Q8IV63 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VRK3Q8IV63 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VRK3Q8IV63 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.19■□□□□ 0.66
VRK3Q8IV63 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 AC239809.2-201ENST00000415381 517 ntBASIC19.18■□□□□ 0.66
VRK3Q8IV63 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 C1QBPP2-201ENST00000528754 825 ntBASIC19.18■□□□□ 0.66
VRK3Q8IV63 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VRK3Q8IV63 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.18■□□□□ 0.66
VRK3Q8IV63 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.17■□□□□ 0.66
VRK3Q8IV63 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VRK3Q8IV63 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms