Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC24.06■■□□□ 1.44
USP48Q86UV5 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
USP48Q86UV5 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
USP48Q86UV5 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
USP48Q86UV5 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP48Q86UV5 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
USP48Q86UV5 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.06■■□□□ 1.44
USP48Q86UV5 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP48Q86UV5 ME2-218ENST00000640965 2476 ntTSL 5 BASIC24.06■■□□□ 1.44
USP48Q86UV5 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC24.06■■□□□ 1.44
USP48Q86UV5 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC24.06■■□□□ 1.44
USP48Q86UV5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
USP48Q86UV5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
USP48Q86UV5 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC24.05■■□□□ 1.44
USP48Q86UV5 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USP48Q86UV5 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC24.05■■□□□ 1.44
USP48Q86UV5 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
USP48Q86UV5 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
USP48Q86UV5 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC24.05■■□□□ 1.44
USP48Q86UV5 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
USP48Q86UV5 WWOX-216ENST00000569818 525 ntBASIC24.05■■□□□ 1.44
USP48Q86UV5 USF2-205ENST00000594064 1179 ntTSL 2 BASIC24.05■■□□□ 1.44
USP48Q86UV5 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC24.05■■□□□ 1.44
USP48Q86UV5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC24.05■■□□□ 1.44
USP48Q86UV5 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC24.05■■□□□ 1.44
USP48Q86UV5 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
USP48Q86UV5 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
USP48Q86UV5 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
USP48Q86UV5 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
USP48Q86UV5 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC24.04■■□□□ 1.44
USP48Q86UV5 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC24.04■■□□□ 1.44
USP48Q86UV5 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC24.04■■□□□ 1.44
USP48Q86UV5 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USP48Q86UV5 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USP48Q86UV5 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC24.04■■□□□ 1.44
USP48Q86UV5 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
USP48Q86UV5 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USP48Q86UV5 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USP48Q86UV5 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
USP48Q86UV5 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC24.04■■□□□ 1.44
USP48Q86UV5 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USP48Q86UV5 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC24.04■■□□□ 1.44
USP48Q86UV5 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC24.03■■□□□ 1.44
USP48Q86UV5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP48Q86UV5 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.03■■□□□ 1.44
USP48Q86UV5 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC24.03■■□□□ 1.44
USP48Q86UV5 AC007225.1-201ENST00000566331 1836 ntBASIC24.03■■□□□ 1.44
USP48Q86UV5 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP48Q86UV5 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.03■■□□□ 1.44
USP48Q86UV5 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP48Q86UV5 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC24.03■■□□□ 1.44
USP48Q86UV5 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC24.03■■□□□ 1.44
USP48Q86UV5 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC24.03■■□□□ 1.44
USP48Q86UV5 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USP48Q86UV5 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC24.03■■□□□ 1.44
USP48Q86UV5 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP48Q86UV5 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC24.03■■□□□ 1.44
USP48Q86UV5 AC004264.1-201ENST00000608354 794 ntBASIC24.03■■□□□ 1.44
USP48Q86UV5 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
USP48Q86UV5 CR392000.1-201ENST00000624770 1228 ntBASIC24.03■■□□□ 1.44
USP48Q86UV5 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USP48Q86UV5 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC24.03■■□□□ 1.44
USP48Q86UV5 AC007952.6-201ENST00000573168 2673 ntBASIC24.03■■□□□ 1.44
USP48Q86UV5 AC003957.1-201ENST00000625108 2673 ntBASIC24.03■■□□□ 1.44
USP48Q86UV5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP48Q86UV5 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP48Q86UV5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP48Q86UV5 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP48Q86UV5 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
USP48Q86UV5 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
USP48Q86UV5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP48Q86UV5 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP48Q86UV5 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC24.02■■□□□ 1.44
USP48Q86UV5 AC116562.2-201ENST00000507042 360 ntBASIC24.02■■□□□ 1.44
USP48Q86UV5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC24.02■■□□□ 1.44
USP48Q86UV5 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
USP48Q86UV5 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC24.02■■□□□ 1.44
USP48Q86UV5 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
USP48Q86UV5 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC24.02■■□□□ 1.43
USP48Q86UV5 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP48Q86UV5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC24.01■■□□□ 1.43
USP48Q86UV5 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP48Q86UV5 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP48Q86UV5 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
USP48Q86UV5 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC24.01■■□□□ 1.43
USP48Q86UV5 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC24.01■■□□□ 1.43
USP48Q86UV5 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC24.01■■□□□ 1.43
USP48Q86UV5 AC010203.1-204ENST00000548782 407 ntBASIC24.01■■□□□ 1.43
USP48Q86UV5 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
USP48Q86UV5 AC020907.5-201ENST00000624372 1936 ntBASIC24.01■■□□□ 1.43
USP48Q86UV5 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.01■■□□□ 1.43
USP48Q86UV5 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
USP48Q86UV5 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP48Q86UV5 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
USP48Q86UV5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC24.01■■□□□ 1.43
USP48Q86UV5 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP48Q86UV5 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP48Q86UV5 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP48Q86UV5 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP48Q86UV5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms