Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
KRT28Q7Z3Y7 TMEM179-206ENST00000616017 1645 ntBASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.7■■□□□ 1.86
KRT28Q7Z3Y7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 DFFB-212ENST00000625756 649 ntTSL 5 BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
KRT28Q7Z3Y7 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 CA15P1-201ENST00000481698 905 ntBASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 AL136038.3-201ENST00000561909 1096 ntBASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
KRT28Q7Z3Y7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 AP003041.3-201ENST00000527151 707 ntBASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 AC012313.10-201ENST00000623509 926 ntBASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
KRT28Q7Z3Y7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 FXN-203ENST00000396366 922 ntTSL 2 BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 VENTXP5-201ENST00000523979 775 ntBASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 FEM1AP4-201ENST00000443167 1987 ntBASIC26.66■■□□□ 1.86
KRT28Q7Z3Y7 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 KRT8P45-201ENST00000414328 1447 ntBASIC26.65■■□□□ 1.86
KRT28Q7Z3Y7 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC26.64■■□□□ 1.86
KRT28Q7Z3Y7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC26.64■■□□□ 1.86
KRT28Q7Z3Y7 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC26.64■■□□□ 1.86
KRT28Q7Z3Y7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC26.64■■□□□ 1.86
KRT28Q7Z3Y7 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC26.64■■□□□ 1.86
KRT28Q7Z3Y7 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
KRT28Q7Z3Y7 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC26.64■■□□□ 1.86
KRT28Q7Z3Y7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC26.64■■□□□ 1.85
KRT28Q7Z3Y7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC26.64■■□□□ 1.85
KRT28Q7Z3Y7 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
KRT28Q7Z3Y7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
KRT28Q7Z3Y7 KRT8P8-201ENST00000434750 1448 ntBASIC26.64■■□□□ 1.85
KRT28Q7Z3Y7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC26.64■■□□□ 1.85
KRT28Q7Z3Y7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC26.63■■□□□ 1.85
KRT28Q7Z3Y7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
KRT28Q7Z3Y7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
KRT28Q7Z3Y7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC26.63■■□□□ 1.85
KRT28Q7Z3Y7 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
KRT28Q7Z3Y7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms