Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 ID1-201ENST00000376105 1233 ntBASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 TSPY6P-201ENST00000448518 926 ntBASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.03■□□□□ 0.64
RNF111Q6ZNA4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 AC087633.2-202ENST00000565166 1439 ntBASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 HLA-L-209ENST00000420110 1011 ntBASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 CYP2T3P-201ENST00000601990 817 ntBASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF111Q6ZNA4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF111Q6ZNA4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.63
RNF111Q6ZNA4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
RNF111Q6ZNA4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF111Q6ZNA4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
RNF111Q6ZNA4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 AL355472.2-201ENST00000422958 438 ntBASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 AC104771.1-201ENST00000603335 964 ntBASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF111Q6ZNA4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF111Q6ZNA4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF111Q6ZNA4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF111Q6ZNA4 KRT18P68-201ENST00000392293 1000 ntBASIC19■□□□□ 0.63
RNF111Q6ZNA4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF111Q6ZNA4 BX276092.2-201ENST00000417668 665 ntBASIC19■□□□□ 0.63
RNF111Q6ZNA4 GUSBP6-202ENST00000438529 1198 ntBASIC19■□□□□ 0.63
RNF111Q6ZNA4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 MARS-234ENST00000630571 216 ntTSL 5 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 MARS-235ENST00000630803 183 ntTSL 3 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 MIR2861-201ENST00000636310 90 ntBASIC19■□□□□ 0.63
RNF111Q6ZNA4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF111Q6ZNA4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF111Q6ZNA4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF111Q6ZNA4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RNF111Q6ZNA4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19■□□□□ 0.63
RNF111Q6ZNA4 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms