Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC24.86■■□□□ 1.57
RC3H1Q5TC82 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
RC3H1Q5TC82 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC24.86■■□□□ 1.57
RC3H1Q5TC82 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC24.85■■□□□ 1.57
RC3H1Q5TC82 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
RC3H1Q5TC82 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
RC3H1Q5TC82 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
RC3H1Q5TC82 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC24.85■■□□□ 1.57
RC3H1Q5TC82 AL160286.2-201ENST00000567150 934 ntBASIC24.85■■□□□ 1.57
RC3H1Q5TC82 AC140113.3-201ENST00000605663 199 ntBASIC24.85■■□□□ 1.57
RC3H1Q5TC82 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC24.85■■□□□ 1.57
RC3H1Q5TC82 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC24.85■■□□□ 1.57
RC3H1Q5TC82 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 TPM4P1-201ENST00000436100 807 ntBASIC24.84■■□□□ 1.57
RC3H1Q5TC82 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC24.84■■□□□ 1.57
RC3H1Q5TC82 AC005332.1-201ENST00000577698 1310 ntBASIC24.84■■□□□ 1.57
RC3H1Q5TC82 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 DAP-202ENST00000432074 1048 ntTSL 2 BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC24.83■■□□□ 1.57
RC3H1Q5TC82 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC24.83■■□□□ 1.56
RC3H1Q5TC82 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 AL359075.1-203ENST00000462729 1002 ntBASIC24.82■■□□□ 1.56
RC3H1Q5TC82 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 AL023973.1-201ENST00000624619 620 ntBASIC24.82■■□□□ 1.56
RC3H1Q5TC82 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RC3H1Q5TC82 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 KRT18P38-201ENST00000449496 1282 ntBASIC24.81■■□□□ 1.56
RC3H1Q5TC82 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 ETFA-216ENST00000560726 942 ntTSL 3 BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 CKBP1-201ENST00000565489 1086 ntBASIC24.81■■□□□ 1.56
RC3H1Q5TC82 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RC3H1Q5TC82 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 PTK2-216ENST00000519881 863 ntTSL 3 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 AP003041.3-201ENST00000527151 707 ntBASIC24.8■■□□□ 1.56
RC3H1Q5TC82 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RC3H1Q5TC82 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RC3H1Q5TC82 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
RC3H1Q5TC82 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RC3H1Q5TC82 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms