Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 MYC-208ENST00000641036 567 ntBASIC18.86■□□□□ 0.61
COL28A1Q2UY09 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL28A1Q2UY09 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.85■□□□□ 0.61
COL28A1Q2UY09 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 CR392000.1-201ENST00000624770 1228 ntBASIC18.85■□□□□ 0.61
COL28A1Q2UY09 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 AC121338.2-201ENST00000622535 1744 ntBASIC18.85■□□□□ 0.61
COL28A1Q2UY09 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
COL28A1Q2UY09 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 AC116050.2-201ENST00000612102 1779 ntBASIC18.84■□□□□ 0.61
COL28A1Q2UY09 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 AL691432.3-201ENST00000621860 400 ntBASIC18.84■□□□□ 0.61
COL28A1Q2UY09 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL28A1Q2UY09 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
COL28A1Q2UY09 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
COL28A1Q2UY09 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.61
COL28A1Q2UY09 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL28A1Q2UY09 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
COL28A1Q2UY09 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL28A1Q2UY09 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL28A1Q2UY09 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL28A1Q2UY09 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL28A1Q2UY09 AC011484.1-201ENST00000377652 1995 ntBASIC18.82■□□□□ 0.6
COL28A1Q2UY09 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 AC007952.6-201ENST00000573168 2673 ntBASIC18.82■□□□□ 0.6
COL28A1Q2UY09 AC003957.1-201ENST00000625108 2673 ntBASIC18.82■□□□□ 0.6
COL28A1Q2UY09 FAM8A6P-201ENST00000407496 1135 ntBASIC18.82■□□□□ 0.6
COL28A1Q2UY09 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 C2orf69P3-201ENST00000565542 1120 ntBASIC18.82■□□□□ 0.6
COL28A1Q2UY09 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 CLEC4GP1-201ENST00000596555 870 ntBASIC18.82■□□□□ 0.6
COL28A1Q2UY09 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL28A1Q2UY09 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms