Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.11
CLTCL1P53675 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CLTCL1P53675 CD37-204ENST00000535669 1674 ntTSL 2 BASIC28.24■■■□□ 2.11
CLTCL1P53675 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLTCL1P53675 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLTCL1P53675 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC28.23■■■□□ 2.11
CLTCL1P53675 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CLTCL1P53675 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CLTCL1P53675 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CLTCL1P53675 HMGA1P5-201ENST00000412453 271 ntBASIC28.23■■■□□ 2.11
CLTCL1P53675 AC117947.1-201ENST00000427448 529 ntBASIC28.23■■■□□ 2.11
CLTCL1P53675 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC28.23■■■□□ 2.11
CLTCL1P53675 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC28.23■■■□□ 2.11
CLTCL1P53675 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC28.23■■■□□ 2.11
CLTCL1P53675 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CLTCL1P53675 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
CLTCL1P53675 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC28.22■■■□□ 2.11
CLTCL1P53675 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC28.22■■■□□ 2.11
CLTCL1P53675 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC28.22■■■□□ 2.11
CLTCL1P53675 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CLTCL1P53675 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
CLTCL1P53675 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC28.22■■■□□ 2.11
CLTCL1P53675 DET1-207ENST00000564406 2315 ntTSL 2 BASIC28.22■■■□□ 2.11
CLTCL1P53675 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 ARMC10P1-201ENST00000313754 855 ntBASIC28.21■■■□□ 2.11
CLTCL1P53675 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC28.21■■■□□ 2.11
CLTCL1P53675 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC28.21■■■□□ 2.11
CLTCL1P53675 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
CLTCL1P53675 AC007663.1-201ENST00000438948 1240 ntBASIC28.21■■■□□ 2.11
CLTCL1P53675 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC28.21■■■□□ 2.11
CLTCL1P53675 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC28.21■■■□□ 2.11
CLTCL1P53675 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC28.21■■■□□ 2.11
CLTCL1P53675 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
CLTCL1P53675 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 LINC01465-201ENST00000408887 1940 ntBASIC28.21■■■□□ 2.11
CLTCL1P53675 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CLTCL1P53675 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC28.21■■■□□ 2.11
CLTCL1P53675 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC28.21■■■□□ 2.11
CLTCL1P53675 TPM1-226ENST00000560959 925 ntTSL 2 BASIC28.21■■■□□ 2.11
CLTCL1P53675 RMI2-205ENST00000576027 818 ntTSL 2 BASIC28.21■■■□□ 2.11
CLTCL1P53675 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC28.21■■■□□ 2.11
CLTCL1P53675 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
CLTCL1P53675 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
CLTCL1P53675 KRT8P41-201ENST00000533985 1514 ntBASIC28.2■■■□□ 2.11
CLTCL1P53675 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
CLTCL1P53675 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
CLTCL1P53675 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC28.2■■■□□ 2.1
CLTCL1P53675 CYGB-204ENST00000589342 815 ntTSL 3 BASIC28.2■■■□□ 2.1
CLTCL1P53675 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC28.2■■■□□ 2.1
CLTCL1P53675 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.1
CLTCL1P53675 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
CLTCL1P53675 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC28.2■■■□□ 2.1
CLTCL1P53675 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CLTCL1P53675 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
CLTCL1P53675 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC28.19■■■□□ 2.1
CLTCL1P53675 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CLTCL1P53675 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
CLTCL1P53675 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC28.19■■■□□ 2.1
CLTCL1P53675 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CLTCL1P53675 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
CLTCL1P53675 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
CLTCL1P53675 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CLTCL1P53675 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC28.18■■■□□ 2.1
CLTCL1P53675 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
CLTCL1P53675 DERL1-203ENST00000419562 918 ntTSL 2 BASIC28.18■■■□□ 2.1
CLTCL1P53675 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CLTCL1P53675 AC063952.2-201ENST00000498792 1227 ntBASIC28.18■■■□□ 2.1
CLTCL1P53675 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC28.18■■■□□ 2.1
CLTCL1P53675 AC130371.2-201ENST00000619443 611 ntBASIC28.18■■■□□ 2.1
CLTCL1P53675 AL138966.2-201ENST00000621997 464 ntBASIC28.18■■■□□ 2.1
CLTCL1P53675 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC28.18■■■□□ 2.1
CLTCL1P53675 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CLTCL1P53675 AL512408.1-201ENST00000569378 2000 ntBASIC28.18■■■□□ 2.1
CLTCL1P53675 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC28.18■■■□□ 2.1
CLTCL1P53675 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
CLTCL1P53675 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
CLTCL1P53675 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC28.18■■■□□ 2.1
CLTCL1P53675 LIN28AP1-201ENST00000429574 405 ntBASIC28.18■■■□□ 2.1
CLTCL1P53675 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC28.18■■■□□ 2.1
CLTCL1P53675 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
CLTCL1P53675 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
CLTCL1P53675 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
CLTCL1P53675 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
CLTCL1P53675 AC007375.3-201ENST00000600936 2314 ntBASIC28.17■■■□□ 2.1
CLTCL1P53675 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CLTCL1P53675 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CLTCL1P53675 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC28.17■■■□□ 2.1
CLTCL1P53675 GUK1-204ENST00000366721 689 ntTSL 3 BASIC28.17■■■□□ 2.1
CLTCL1P53675 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC28.17■■■□□ 2.1
CLTCL1P53675 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC28.17■■■□□ 2.1
CLTCL1P53675 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms