Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMK1P53667 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMK1P53667 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.43■□□□□ 0.7
LIMK1P53667 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.43■□□□□ 0.7
LIMK1P53667 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.43■□□□□ 0.7
LIMK1P53667 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.43■□□□□ 0.7
LIMK1P53667 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.43■□□□□ 0.7
LIMK1P53667 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.43■□□□□ 0.7
LIMK1P53667 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.43■□□□□ 0.7
LIMK1P53667 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMK1P53667 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMK1P53667 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMK1P53667 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMK1P53667 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMK1P53667 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMK1P53667 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMK1P53667 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMK1P53667 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMK1P53667 COX11P1-201ENST00000489116 835 ntBASIC19.42■□□□□ 0.7
LIMK1P53667 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
LIMK1P53667 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMK1P53667 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMK1P53667 Z98882.1-201ENST00000622160 2253 ntBASIC19.42■□□□□ 0.7
LIMK1P53667 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.42■□□□□ 0.7
LIMK1P53667 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMK1P53667 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 AF106564.1-201ENST00000607058 2553 ntBASIC19.41■□□□□ 0.7
LIMK1P53667 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LIMK1P53667 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LIMK1P53667 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
LIMK1P53667 INGX-201ENST00000359239 846 ntBASIC19.41■□□□□ 0.7
LIMK1P53667 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMK1P53667 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.41■□□□□ 0.7
LIMK1P53667 C1QL1P1-201ENST00000568105 661 ntBASIC19.41■□□□□ 0.7
LIMK1P53667 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.41■□□□□ 0.7
LIMK1P53667 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMK1P53667 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMK1P53667 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.41■□□□□ 0.7
LIMK1P53667 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
LIMK1P53667 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMK1P53667 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMK1P53667 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMK1P53667 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMK1P53667 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMK1P53667 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LIMK1P53667 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
LIMK1P53667 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMK1P53667 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMK1P53667 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMK1P53667 HCG4P8-203ENST00000443049 980 ntBASIC19.4■□□□□ 0.7
LIMK1P53667 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.4■□□□□ 0.7
LIMK1P53667 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.4■□□□□ 0.7
LIMK1P53667 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.4■□□□□ 0.7
LIMK1P53667 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMK1P53667 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.4■□□□□ 0.7
LIMK1P53667 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMK1P53667 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.4■□□□□ 0.7
LIMK1P53667 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LIMK1P53667 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.4■□□□□ 0.7
LIMK1P53667 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMK1P53667 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
LIMK1P53667 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMK1P53667 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LIMK1P53667 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LIMK1P53667 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMK1P53667 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMK1P53667 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
LIMK1P53667 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMK1P53667 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMK1P53667 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMK1P53667 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
LIMK1P53667 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMK1P53667 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMK1P53667 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMK1P53667 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LIMK1P53667 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMK1P53667 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
LIMK1P53667 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.39■□□□□ 0.69
LIMK1P53667 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMK1P53667 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMK1P53667 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMK1P53667 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMK1P53667 CLEC4GP1-201ENST00000596555 870 ntBASIC19.39■□□□□ 0.69
LIMK1P53667 AC093458.2-201ENST00000623150 629 ntBASIC19.39■□□□□ 0.69
LIMK1P53667 AC116562.4-202ENST00000641738 218 ntBASIC19.39■□□□□ 0.69
LIMK1P53667 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms