Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC27.33■■□□□ 1.96
MSH6P52701 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
MSH6P52701 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.96
MSH6P52701 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC27.32■■□□□ 1.96
MSH6P52701 AC018553.1-201ENST00000616682 1458 ntBASIC27.32■■□□□ 1.96
MSH6P52701 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC27.32■■□□□ 1.96
MSH6P52701 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC27.32■■□□□ 1.96
MSH6P52701 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC27.32■■□□□ 1.96
MSH6P52701 CNP-204ENST00000472031 1019 ntTSL 2 BASIC27.32■■□□□ 1.96
MSH6P52701 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC27.32■■□□□ 1.96
MSH6P52701 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC27.32■■□□□ 1.96
MSH6P52701 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC27.32■■□□□ 1.96
MSH6P52701 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC27.32■■□□□ 1.96
MSH6P52701 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC27.32■■□□□ 1.96
MSH6P52701 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH6P52701 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH6P52701 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC27.31■■□□□ 1.96
MSH6P52701 ECEL1P1-201ENST00000373592 1742 ntBASIC27.31■■□□□ 1.96
MSH6P52701 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH6P52701 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC27.31■■□□□ 1.96
MSH6P52701 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
MSH6P52701 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
MSH6P52701 DERL1-203ENST00000419562 918 ntTSL 2 BASIC27.31■■□□□ 1.96
MSH6P52701 AL845331.1-201ENST00000424978 1190 ntBASIC27.31■■□□□ 1.96
MSH6P52701 FAAHP1-202ENST00000446499 1238 ntBASIC27.31■■□□□ 1.96
MSH6P52701 SKP2-204ENST00000508514 821 ntTSL 3 BASIC27.31■■□□□ 1.96
MSH6P52701 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
MSH6P52701 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC27.31■■□□□ 1.96
MSH6P52701 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
MSH6P52701 LINC01311-201ENST00000565162 1445 ntBASIC27.3■■□□□ 1.96
MSH6P52701 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC27.3■■□□□ 1.96
MSH6P52701 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
MSH6P52701 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC27.3■■□□□ 1.96
MSH6P52701 STARP1-201ENST00000397973 869 ntBASIC27.3■■□□□ 1.96
MSH6P52701 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC27.3■■□□□ 1.96
MSH6P52701 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
MSH6P52701 AP003041.3-201ENST00000527151 707 ntBASIC27.3■■□□□ 1.96
MSH6P52701 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC27.3■■□□□ 1.96
MSH6P52701 LSR-203ENST00000360798 1963 ntTSL 2 BASIC27.3■■□□□ 1.96
MSH6P52701 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
MSH6P52701 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC27.29■■□□□ 1.96
MSH6P52701 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
MSH6P52701 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC27.29■■□□□ 1.96
MSH6P52701 AP000593.1-201ENST00000393668 712 ntBASIC27.29■■□□□ 1.96
MSH6P52701 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC27.29■■□□□ 1.96
MSH6P52701 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC27.29■■□□□ 1.96
MSH6P52701 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
MSH6P52701 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC27.29■■□□□ 1.96
MSH6P52701 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH6P52701 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC27.29■■□□□ 1.96
MSH6P52701 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
MSH6P52701 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH6P52701 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH6P52701 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
MSH6P52701 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC27.28■■□□□ 1.96
MSH6P52701 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
MSH6P52701 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
MSH6P52701 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC27.28■■□□□ 1.96
MSH6P52701 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC27.28■■□□□ 1.96
MSH6P52701 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH6P52701 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
MSH6P52701 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC27.27■■□□□ 1.96
MSH6P52701 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
MSH6P52701 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC27.27■■□□□ 1.96
MSH6P52701 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC27.27■■□□□ 1.96
MSH6P52701 CALM1-205ENST00000553542 877 ntTSL 5 BASIC27.27■■□□□ 1.96
MSH6P52701 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
MSH6P52701 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
MSH6P52701 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH6P52701 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC27.27■■□□□ 1.96
MSH6P52701 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
MSH6P52701 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
MSH6P52701 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
MSH6P52701 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
MSH6P52701 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.96
MSH6P52701 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH6P52701 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC27.26■■□□□ 1.95
MSH6P52701 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
MSH6P52701 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH6P52701 Telomerase-vert.1-201ENST00000363312 438 ntBASIC27.26■■□□□ 1.95
MSH6P52701 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
MSH6P52701 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC27.26■■□□□ 1.95
MSH6P52701 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC27.26■■□□□ 1.95
MSH6P52701 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms