Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.61■■□□□ 1.05
CLCN3P51790 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.61■■□□□ 1.05
CLCN3P51790 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.61■■□□□ 1.05
CLCN3P51790 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.61■■□□□ 1.05
CLCN3P51790 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 HLA-A-209ENST00000638375 975 ntBASIC21.61■■□□□ 1.05
CLCN3P51790 AC097493.4-201ENST00000641197 219 ntBASIC21.61■■□□□ 1.05
CLCN3P51790 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLCN3P51790 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
CLCN3P51790 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.6■■□□□ 1.05
CLCN3P51790 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.6■■□□□ 1.05
CLCN3P51790 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.6■■□□□ 1.05
CLCN3P51790 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.6■■□□□ 1.05
CLCN3P51790 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.6■■□□□ 1.05
CLCN3P51790 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.6■■□□□ 1.05
CLCN3P51790 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.6■■□□□ 1.05
CLCN3P51790 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 AC099778.1-201ENST00000568593 1911 ntBASIC21.6■■□□□ 1.05
CLCN3P51790 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLCN3P51790 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.59■■□□□ 1.05
CLCN3P51790 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 AC011506.1-201ENST00000474329 610 ntBASIC21.59■■□□□ 1.05
CLCN3P51790 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.59■■□□□ 1.05
CLCN3P51790 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.59■■□□□ 1.05
CLCN3P51790 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CLCN3P51790 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.59■■□□□ 1.05
CLCN3P51790 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLCN3P51790 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.58■■□□□ 1.05
CLCN3P51790 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
CLCN3P51790 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.58■■□□□ 1.05
CLCN3P51790 KRT18P21-201ENST00000515767 1272 ntBASIC21.58■■□□□ 1.05
CLCN3P51790 AC026271.3-201ENST00000571884 352 ntBASIC21.58■■□□□ 1.05
CLCN3P51790 MIR6786-201ENST00000616843 113 ntBASIC21.58■■□□□ 1.05
CLCN3P51790 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLCN3P51790 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
CLCN3P51790 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLCN3P51790 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.58■■□□□ 1.04
CLCN3P51790 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CLCN3P51790 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.57■■□□□ 1.04
CLCN3P51790 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CLCN3P51790 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CLCN3P51790 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.57■■□□□ 1.04
CLCN3P51790 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CLCN3P51790 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 FAM210CP-201ENST00000445714 574 ntBASIC21.57■■□□□ 1.04
CLCN3P51790 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CLCN3P51790 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.57■■□□□ 1.04
CLCN3P51790 B3GAT3P1-201ENST00000471720 806 ntBASIC21.57■■□□□ 1.04
CLCN3P51790 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
CLCN3P51790 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.57■■□□□ 1.04
CLCN3P51790 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.57■■□□□ 1.04
CLCN3P51790 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.57■■□□□ 1.04
CLCN3P51790 AC131212.4-201ENST00000623606 975 ntBASIC21.57■■□□□ 1.04
CLCN3P51790 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.57■■□□□ 1.04
CLCN3P51790 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CLCN3P51790 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 FSCN1P1-201ENST00000568912 1481 ntBASIC21.57■■□□□ 1.04
CLCN3P51790 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CLCN3P51790 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CLCN3P51790 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLCN3P51790 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.56■■□□□ 1.04
CLCN3P51790 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 KRT8P8-201ENST00000434750 1448 ntBASIC21.56■■□□□ 1.04
CLCN3P51790 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.56■■□□□ 1.04
CLCN3P51790 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLCN3P51790 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms