Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CX3CR1P49238 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.23■□□□□ 0.35
CX3CR1P49238 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.23■□□□□ 0.35
CX3CR1P49238 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.23■□□□□ 0.35
CX3CR1P49238 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CX3CR1P49238 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.23■□□□□ 0.35
CX3CR1P49238 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.23■□□□□ 0.35
CX3CR1P49238 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.23■□□□□ 0.35
CX3CR1P49238 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.23■□□□□ 0.35
CX3CR1P49238 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CX3CR1P49238 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CX3CR1P49238 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CX3CR1P49238 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.23■□□□□ 0.35
CX3CR1P49238 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.23■□□□□ 0.35
CX3CR1P49238 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CX3CR1P49238 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.22■□□□□ 0.35
CX3CR1P49238 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 MIPEPP3-201ENST00000412105 444 ntBASIC17.22■□□□□ 0.35
CX3CR1P49238 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.22■□□□□ 0.35
CX3CR1P49238 AC083906.2-201ENST00000511578 360 ntBASIC17.22■□□□□ 0.35
CX3CR1P49238 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.22■□□□□ 0.35
CX3CR1P49238 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.22■□□□□ 0.35
CX3CR1P49238 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.22■□□□□ 0.35
CX3CR1P49238 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
CX3CR1P49238 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.22■□□□□ 0.35
CX3CR1P49238 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CX3CR1P49238 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
CX3CR1P49238 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CX3CR1P49238 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CX3CR1P49238 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CX3CR1P49238 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CX3CR1P49238 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CX3CR1P49238 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CX3CR1P49238 AC093484.2-201ENST00000580996 2166 ntBASIC17.21■□□□□ 0.35
CX3CR1P49238 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CX3CR1P49238 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.21■□□□□ 0.35
CX3CR1P49238 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.21■□□□□ 0.35
CX3CR1P49238 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CX3CR1P49238 AL390719.1-204ENST00000412397 1219 ntBASIC17.21■□□□□ 0.35
CX3CR1P49238 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.21■□□□□ 0.35
CX3CR1P49238 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.21■□□□□ 0.35
CX3CR1P49238 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.21■□□□□ 0.35
CX3CR1P49238 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.21■□□□□ 0.35
CX3CR1P49238 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.21■□□□□ 0.35
CX3CR1P49238 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
CX3CR1P49238 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CX3CR1P49238 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.21■□□□□ 0.34
CX3CR1P49238 HCG11-201ENST00000411553 5696 ntBASIC17.21■□□□□ 0.34
CX3CR1P49238 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.2■□□□□ 0.34
CX3CR1P49238 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CX3CR1P49238 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.2■□□□□ 0.34
CX3CR1P49238 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CX3CR1P49238 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CX3CR1P49238 SLC29A4P1-201ENST00000398760 971 ntBASIC17.2■□□□□ 0.34
CX3CR1P49238 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.2■□□□□ 0.34
CX3CR1P49238 DUSP5P2-201ENST00000426873 1033 ntBASIC17.2■□□□□ 0.34
CX3CR1P49238 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.2■□□□□ 0.34
CX3CR1P49238 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.2■□□□□ 0.34
CX3CR1P49238 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CX3CR1P49238 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.2■□□□□ 0.34
CX3CR1P49238 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CX3CR1P49238 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms