Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.02■□□□□ 0.64
HNF4AP41235 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.02■□□□□ 0.64
HNF4AP41235 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.02■□□□□ 0.64
HNF4AP41235 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.02■□□□□ 0.64
HNF4AP41235 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HNF4AP41235 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.02■□□□□ 0.63
HNF4AP41235 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
HNF4AP41235 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.02■□□□□ 0.63
HNF4AP41235 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.02■□□□□ 0.63
HNF4AP41235 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.02■□□□□ 0.63
HNF4AP41235 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.02■□□□□ 0.63
HNF4AP41235 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
HNF4AP41235 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.01■□□□□ 0.63
HNF4AP41235 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.01■□□□□ 0.63
HNF4AP41235 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
HNF4AP41235 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
HNF4AP41235 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.01■□□□□ 0.63
HNF4AP41235 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.01■□□□□ 0.63
HNF4AP41235 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.01■□□□□ 0.63
HNF4AP41235 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.01■□□□□ 0.63
HNF4AP41235 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.01■□□□□ 0.63
HNF4AP41235 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.01■□□□□ 0.63
HNF4AP41235 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.01■□□□□ 0.63
HNF4AP41235 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 SOX15-203ENST00000570788 1093 ntBASIC19.01■□□□□ 0.63
HNF4AP41235 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
HNF4AP41235 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.01■□□□□ 0.63
HNF4AP41235 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
HNF4AP41235 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.01■□□□□ 0.63
HNF4AP41235 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HNF4AP41235 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.01■□□□□ 0.63
HNF4AP41235 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
HNF4AP41235 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19■□□□□ 0.63
HNF4AP41235 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19■□□□□ 0.63
HNF4AP41235 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19■□□□□ 0.63
HNF4AP41235 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HNF4AP41235 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19■□□□□ 0.63
HNF4AP41235 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19■□□□□ 0.63
HNF4AP41235 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19■□□□□ 0.63
HNF4AP41235 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19■□□□□ 0.63
HNF4AP41235 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19■□□□□ 0.63
HNF4AP41235 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
HNF4AP41235 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19■□□□□ 0.63
HNF4AP41235 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19■□□□□ 0.63
HNF4AP41235 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 AC124283.5-201ENST00000624661 1809 ntBASIC19■□□□□ 0.63
HNF4AP41235 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19■□□□□ 0.63
HNF4AP41235 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HNF4AP41235 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HNF4AP41235 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
HNF4AP41235 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HNF4AP41235 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.99■□□□□ 0.63
HNF4AP41235 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
HNF4AP41235 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HNF4AP41235 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HNF4AP41235 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HNF4AP41235 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HNF4AP41235 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HNF4AP41235 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.99■□□□□ 0.63
HNF4AP41235 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
HNF4AP41235 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.99■□□□□ 0.63
HNF4AP41235 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.99■□□□□ 0.63
HNF4AP41235 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.99■□□□□ 0.63
HNF4AP41235 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms