Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SHMT2P34897 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHMT2P34897 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SHMT2P34897 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.21■□□□□ 0.67
SHMT2P34897 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SHMT2P34897 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SHMT2P34897 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHMT2P34897 AC239809.2-201ENST00000415381 517 ntBASIC19.21■□□□□ 0.67
SHMT2P34897 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.21■□□□□ 0.67
SHMT2P34897 GCSHP5-201ENST00000443090 522 ntBASIC19.21■□□□□ 0.67
SHMT2P34897 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.21■□□□□ 0.67
SHMT2P34897 AC098590.1-201ENST00000468126 897 ntBASIC19.21■□□□□ 0.67
SHMT2P34897 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.21■□□□□ 0.67
SHMT2P34897 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHMT2P34897 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.21■□□□□ 0.67
SHMT2P34897 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.21■□□□□ 0.67
SHMT2P34897 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHMT2P34897 AC142381.4-202ENST00000563973 229 ntBASIC19.21■□□□□ 0.67
SHMT2P34897 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.21■□□□□ 0.67
SHMT2P34897 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHMT2P34897 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHMT2P34897 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
SHMT2P34897 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.2■□□□□ 0.66
SHMT2P34897 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 RPPH1-201ENST00000516869 333 ntBASIC19.2■□□□□ 0.66
SHMT2P34897 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.2■□□□□ 0.66
SHMT2P34897 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.2■□□□□ 0.66
SHMT2P34897 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.2■□□□□ 0.66
SHMT2P34897 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SHMT2P34897 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.2■□□□□ 0.66
SHMT2P34897 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.2■□□□□ 0.66
SHMT2P34897 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.2■□□□□ 0.66
SHMT2P34897 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.2■□□□□ 0.66
SHMT2P34897 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHMT2P34897 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.2■□□□□ 0.66
SHMT2P34897 AC116351.2-201ENST00000606540 1585 ntBASIC19.19■□□□□ 0.66
SHMT2P34897 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SHMT2P34897 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SHMT2P34897 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 AL158047.1-201ENST00000445918 881 ntBASIC19.19■□□□□ 0.66
SHMT2P34897 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.19■□□□□ 0.66
SHMT2P34897 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.19■□□□□ 0.66
SHMT2P34897 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.19■□□□□ 0.66
SHMT2P34897 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 AL359736.2-201ENST00000621992 437 ntBASIC19.19■□□□□ 0.66
SHMT2P34897 AL023875.1-201ENST00000640777 796 ntBASIC19.19■□□□□ 0.66
SHMT2P34897 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SHMT2P34897 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.19■□□□□ 0.66
SHMT2P34897 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHMT2P34897 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHMT2P34897 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SHMT2P34897 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHMT2P34897 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.18■□□□□ 0.66
SHMT2P34897 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.18■□□□□ 0.66
SHMT2P34897 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.18■□□□□ 0.66
SHMT2P34897 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.18■□□□□ 0.66
SHMT2P34897 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.18■□□□□ 0.66
SHMT2P34897 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
SHMT2P34897 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.18■□□□□ 0.66
SHMT2P34897 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.18■□□□□ 0.66
SHMT2P34897 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
SHMT2P34897 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.18■□□□□ 0.66
SHMT2P34897 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.18■□□□□ 0.66
SHMT2P34897 FAM197Y4-202ENST00000622692 608 ntBASIC19.18■□□□□ 0.66
SHMT2P34897 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
SHMT2P34897 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHMT2P34897 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHMT2P34897 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHMT2P34897 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.18■□□□□ 0.66
SHMT2P34897 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHMT2P34897 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHMT2P34897 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.17■□□□□ 0.66
SHMT2P34897 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms