Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 FSCN1P1-201ENST00000568912 1481 ntBASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 KRT8P8-201ENST00000434750 1448 ntBASIC19.68■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AL162377.1-201ENST00000618844 1793 ntBASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AP000525.1-201ENST00000608286 694 ntBASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 AC004980.1-204ENST00000429707 299 ntBASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 MIR6786-201ENST00000616843 113 ntBASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
C1QTNF3-AMACRE9PGA6 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms