Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.74■□□□□ 0.43
COL6A6A6NMZ7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 Z85996.1-201ENST00000494644 937 ntBASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 MIR2861-201ENST00000636310 90 ntBASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 AC079781.3-201ENST00000449110 356 ntBASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.73■□□□□ 0.43
COL6A6A6NMZ7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 AL662844.1-201ENST00000546340 181 ntBASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 SPDYE13P-201ENST00000445314 798 ntBASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 AC092329.2-201ENST00000598402 547 ntBASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL6A6A6NMZ7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 AL031008.1-201ENST00000619963 541 ntBASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A6A6NMZ7 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A6A6NMZ7 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 AP002383.4-201ENST00000442518 975 ntBASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 AL121672.3-201ENST00000608644 468 ntBASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
COL6A6A6NMZ7 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 PMS2P1-201ENST00000431037 1228 ntBASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A6A6NMZ7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms