Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
NPAS3Q8IXF0 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC7.65□□□□□ -1.18
NPAS3Q8IXF0 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC7.65□□□□□ -1.18
NPAS3Q8IXF0 OAZ3-211ENST00000639906 708 ntAPPRIS P2 TSL 5 BASIC7.65□□□□□ -1.18
NPAS3Q8IXF0 AC006058.1-201ENST00000568686 5067 ntBASIC7.65□□□□□ -1.19
NPAS3Q8IXF0 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.19
NPAS3Q8IXF0 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
NPAS3Q8IXF0 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.19
NPAS3Q8IXF0 GOSR2-238ENST00000640495 3395 ntTSL 5 BASIC7.65□□□□□ -1.19
NPAS3Q8IXF0 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.19
NPAS3Q8IXF0 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
NPAS3Q8IXF0 NUSAP1-210ENST00000560177 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 THSD4-AS1-202ENST00000562634 2182 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC002090.1-201ENST00000625000 2138 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC139491.2-201ENST00000515403 3632 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 NQO1-201ENST00000320623 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC103591.2-201ENST00000265259 766 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 MBD3L1-201ENST00000305625 748 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 Y_RNA.128-201ENST00000363391 112 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 Y_RNA.193-201ENST00000363979 102 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RNU6-660P-201ENST00000364566 109 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 Y_RNA.307-201ENST00000365022 117 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RNU6-474P-201ENST00000384243 107 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 LARP1P1-201ENST00000407692 292 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC024082.2-201ENST00000434771 238 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 OR52B5P-201ENST00000435337 951 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 DNAJA1P6-201ENST00000437347 354 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AL451074.3-201ENST00000437709 472 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RPL21P33-201ENST00000444831 484 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 Z82190.1-201ENST00000454534 490 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 MTND5P22-201ENST00000458380 195 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RNU6-1208P-201ENST00000459588 107 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RN7SL836P-201ENST00000476140 296 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 MYL6P4-201ENST00000477911 453 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RN7SL849P-201ENST00000485236 295 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RN7SL283P-201ENST00000489055 303 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 RN7SL775P-201ENST00000498361 336 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC022447.3-201ENST00000506865 495 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC008837.2-201ENST00000513076 418 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 SDHCP4-201ENST00000532834 510 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC011611.1-201ENST00000552179 197 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 CHEK2P2-201ENST00000554701 672 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AL157687.1-201ENST00000554853 619 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC008269.2-201ENST00000561915 1105 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 VN1R80P-201ENST00000597126 338 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AL078623.1-201ENST00000602702 907 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC233280.2-201ENST00000603917 1070 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 IGKV2OR2-7-201ENST00000604652 304 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC016925.2-201ENST00000605108 242 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 MESTIT1_2.1-201ENST00000616328 235 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC135068.11-201ENST00000636378 921 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AF001550.2-201ENST00000636643 217 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 OR52B5P-202ENST00000641118 1110 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 IL1RL1-203ENST00000404917 3571 ntTSL 2 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC127502.2-201ENST00000602663 2351 ntBASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 PRKAR2A-AS1-202ENST00000416209 3447 ntTSL 2 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
NPAS3Q8IXF0 PHF2P2-202ENST00000444553 2865 ntBASIC7.64□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms