Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
BDNFP23560 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.26□□□□□ -1.41
BDNFP23560 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.26□□□□□ -1.41
BDNFP23560 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.26□□□□□ -1.41
BDNFP23560 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
BDNFP23560 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.26□□□□□ -1.41
BDNFP23560 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC6.26□□□□□ -1.41
BDNFP23560 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC6.26□□□□□ -1.41
BDNFP23560 TXNP4-201ENST00000575018 310 ntBASIC6.26□□□□□ -1.41
BDNFP23560 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC6.26□□□□□ -1.41
BDNFP23560 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC6.26□□□□□ -1.41
BDNFP23560 OR5AC4P-202ENST00000642086 985 ntBASIC6.26□□□□□ -1.41
BDNFP23560 PDZK1P1-202ENST00000425209 1350 ntBASIC6.26□□□□□ -1.41
BDNFP23560 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.26□□□□□ -1.41
BDNFP23560 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
BDNFP23560 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.26□□□□□ -1.41
BDNFP23560 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
BDNFP23560 HSPD1P8-201ENST00000400121 1658 ntBASIC6.26□□□□□ -1.41
BDNFP23560 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
BDNFP23560 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.26□□□□□ -1.41
BDNFP23560 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.25□□□□□ -1.41
BDNFP23560 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
BDNFP23560 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
BDNFP23560 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
BDNFP23560 RNA5SP211-201ENST00000365516 117 ntBASIC6.25□□□□□ -1.41
BDNFP23560 MIR421-201ENST00000365696 85 ntBASIC6.25□□□□□ -1.41
BDNFP23560 AC083799.1-201ENST00000366451 910 ntBASIC6.25□□□□□ -1.41
BDNFP23560 SNORA70H-201ENST00000383910 135 ntBASIC6.25□□□□□ -1.41
BDNFP23560 SNORA70J-201ENST00000384182 135 ntBASIC6.25□□□□□ -1.41
BDNFP23560 RNA5SP284-201ENST00000384547 118 ntBASIC6.25□□□□□ -1.41
BDNFP23560 AL031985.1-201ENST00000392713 418 ntBASIC6.25□□□□□ -1.41
BDNFP23560 RNA5SP498-201ENST00000411342 120 ntBASIC6.25□□□□□ -1.41
BDNFP23560 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC6.25□□□□□ -1.41
BDNFP23560 EEF1B2P8-201ENST00000414101 671 ntBASIC6.25□□□□□ -1.41
BDNFP23560 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC6.25□□□□□ -1.41
BDNFP23560 MTND6P12-201ENST00000428247 522 ntBASIC6.25□□□□□ -1.41
BDNFP23560 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.25□□□□□ -1.41
BDNFP23560 CUBNP2-201ENST00000443534 1139 ntBASIC6.25□□□□□ -1.41
BDNFP23560 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.25□□□□□ -1.41
BDNFP23560 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC6.25□□□□□ -1.41
BDNFP23560 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC6.25□□□□□ -1.41
BDNFP23560 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.25□□□□□ -1.41
BDNFP23560 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.25□□□□□ -1.41
BDNFP23560 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
BDNFP23560 GARSP1-201ENST00000570895 719 ntBASIC6.25□□□□□ -1.41
BDNFP23560 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
BDNFP23560 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.25□□□□□ -1.41
BDNFP23560 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 AC096553.1-201ENST00000605169 829 ntBASIC6.25□□□□□ -1.41
BDNFP23560 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 AC009032.1-201ENST00000617574 431 ntBASIC6.25□□□□□ -1.41
BDNFP23560 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC6.25□□□□□ -1.41
BDNFP23560 AC020763.5-201ENST00000623298 430 ntBASIC6.25□□□□□ -1.41
BDNFP23560 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.25□□□□□ -1.41
BDNFP23560 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.25□□□□□ -1.41
BDNFP23560 OR11H2-202ENST00000641517 1085 ntBASIC6.25□□□□□ -1.41
BDNFP23560 AC008691.1-209ENST00000642094 814 ntBASIC6.25□□□□□ -1.41
BDNFP23560 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC6.25□□□□□ -1.41
BDNFP23560 AP005435.3-201ENST00000531260 3198 ntBASIC6.25□□□□□ -1.41
BDNFP23560 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 LINC01963-201ENST00000562038 3148 ntBASIC6.25□□□□□ -1.41
BDNFP23560 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
BDNFP23560 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
BDNFP23560 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 AL445437.1-201ENST00000623157 3087 ntBASIC6.24□□□□□ -1.41
BDNFP23560 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 THAP12P9-201ENST00000503971 2360 ntBASIC6.24□□□□□ -1.41
BDNFP23560 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC6.24□□□□□ -1.41
BDNFP23560 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
BDNFP23560 RN7SKP78-201ENST00000364711 318 ntBASIC6.24□□□□□ -1.41
BDNFP23560 RN7SKP269-201ENST00000365545 319 ntBASIC6.24□□□□□ -1.41
BDNFP23560 PPCS-201ENST00000372556 984 ntTSL 2 BASIC6.24□□□□□ -1.41
BDNFP23560 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
BDNFP23560 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 AC104843.2-201ENST00000427666 297 ntBASIC6.24□□□□□ -1.41
BDNFP23560 RPS12P17-201ENST00000438591 377 ntBASIC6.24□□□□□ -1.41
BDNFP23560 AC114878.1-201ENST00000441166 358 ntBASIC6.24□□□□□ -1.41
BDNFP23560 AC245517.2-201ENST00000442890 346 ntBASIC6.24□□□□□ -1.41
BDNFP23560 AC023512.1-201ENST00000444513 499 ntBASIC6.24□□□□□ -1.41
BDNFP23560 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC6.24□□□□□ -1.41
BDNFP23560 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 SETP20-201ENST00000457046 852 ntBASIC6.24□□□□□ -1.41
BDNFP23560 AC093166.4-201ENST00000457867 318 ntBASIC6.24□□□□□ -1.41
BDNFP23560 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
BDNFP23560 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms