Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ATP5A1P8-201ENST00000423669 1291 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 GAPDHP75-201ENST00000433910 943 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC138761.5-201ENST00000433967 325 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL392003.1-201ENST00000434394 243 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC096775.1-201ENST00000437724 448 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL691517.1-201ENST00000440833 1235 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 HMGN1P2-201ENST00000445197 310 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 RPS15AP29-201ENST00000445539 400 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 SEPHS1P4-201ENST00000446112 1176 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 DUTP1-201ENST00000493631 470 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 RN7SKP35-201ENST00000517210 151 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 OR10D4P-201ENST00000525892 951 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 ASB8-202ENST00000535055 657 ntTSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL163952.1-202ENST00000569625 600 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AP005119.1-201ENST00000580956 292 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC006115.2-201ENST00000596823 202 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 LSM1P2-201ENST00000604911 322 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 WBP1LP8-201ENST00000617401 327 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 RNA5SP439-201ENST00000617595 124 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AC026367.3-201ENST00000619032 590 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL162233.1-201ENST00000620014 944 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 AP000720.1-201ENST00000625091 483 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 AP000550.3-201ENST00000637734 379 ntBASIC4.99□□□□□ -1.61
NKX3-1Q99801 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.99□□□□□ -1.61
NKX3-1Q99801 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NKX3-1Q99801 EEF1A1P21-201ENST00000512363 1344 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 USP40-202ENST00000409945 1946 ntTSL 2 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC007842.1-201ENST00000597336 2039 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 RN7SKP185-201ENST00000362813 326 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AL353625.1-202ENST00000366273 571 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 SNORA70.6-201ENST00000383934 134 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 MIR130B-202ENST00000385018 82 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AL589655.1-201ENST00000405398 482 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 RNA5SP198-201ENST00000410376 127 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 RAB9AP4-201ENST00000415230 609 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AL390879.2-203ENST00000426943 1121 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 MTND4LP7-201ENST00000431728 294 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 RPL12P11-201ENST00000439970 501 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 ATP5LP2-201ENST00000440646 311 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC015983.1-201ENST00000441577 373 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 ABCC13-202ENST00000463099 3842 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 NDUFA5P5-201ENST00000468361 342 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 PDCL3P4-201ENST00000489621 720 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 RN7SKP238-201ENST00000516483 249 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 OR8Q1P-201ENST00000526467 655 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 ZNF322P1-201ENST00000568013 1209 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC027281.1-201ENST00000574178 758 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 290.3 ms