Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 AP002373.2-201ENST00000541631 1060 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.79□□□□□ -1.48
COL4A4P53420 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.79□□□□□ -1.48
COL4A4P53420 MIR4691-201ENST00000583764 85 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AC093799.2-201ENST00000610062 578 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AC090607.5-201ENST00000615692 224 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 WBP1LP8-201ENST00000617401 327 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC5.79□□□□□ -1.48
COL4A4P53420 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
COL4A4P53420 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 AL356317.1-201ENST00000396110 1436 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
COL4A4P53420 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 SNORA51.8-201ENST00000384234 132 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 GAPDHP15-201ENST00000398586 975 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AC096921.1-201ENST00000411661 375 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 DDX39BP1-205ENST00000422507 192 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 HMGB1P44-201ENST00000508597 572 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 AC021006.3-201ENST00000530771 192 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.79□□□□□ -1.48
COL4A4P53420 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.79□□□□□ -1.48
COL4A4P53420 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.79□□□□□ -1.48
COL4A4P53420 AP005403.1-201ENST00000579720 229 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.79□□□□□ -1.48
COL4A4P53420 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.79□□□□□ -1.48
COL4A4P53420 AL138960.1-201ENST00000613838 513 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AC245389.2-201ENST00000616023 576 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AC242843.1-201ENST00000618702 573 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 AC073869.10-201ENST00000642016 354 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 AC034229.2-201ENST00000566945 2508 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 AP004607.3-201ENST00000530354 3915 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL4A4P53420 MAPK10-270ENST00000641102 3538 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 IRF5P1-201ENST00000504852 2164 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.78□□□□□ -1.48
COL4A4P53420 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.78□□□□□ -1.48
COL4A4P53420 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.78□□□□□ -1.48
COL4A4P53420 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 AC099670.2-201ENST00000435130 321 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 AC073648.4-201ENST00000442655 781 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 AC073264.2-201ENST00000448886 166 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.78□□□□□ -1.48
COL4A4P53420 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.78□□□□□ -1.48
COL4A4P53420 AC020898.1-201ENST00000474167 787 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 RPL7P16-201ENST00000479738 738 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.78□□□□□ -1.48
COL4A4P53420 OR7H2P-201ENST00000513483 306 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.78□□□□□ -1.48
COL4A4P53420 AC122688.1-201ENST00000541494 223 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.78□□□□□ -1.48
COL4A4P53420 MIR4270-201ENST00000581799 70 ntBASIC5.78□□□□□ -1.48
COL4A4P53420 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.78□□□□□ -1.48
COL4A4P53420 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL4A4P53420 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
COL4A4P53420 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.78□□□□□ -1.48
COL4A4P53420 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL4A4P53420 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
COL4A4P53420 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 SNX18P3-202ENST00000565670 1750 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
COL4A4P53420 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.77□□□□□ -1.49
COL4A4P53420 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.77□□□□□ -1.49
COL4A4P53420 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL4A4P53420 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL4A4P53420 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL4A4P53420 RPL11P3-201ENST00000395256 523 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 EI24P4-201ENST00000423683 1078 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 RIMKLBP2-201ENST00000424737 654 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.77□□□□□ -1.49
COL4A4P53420 GAPDHP25-201ENST00000447061 1001 ntBASIC5.77□□□□□ -1.49
COL4A4P53420 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 145.2 ms