Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 SNORA5.1-201ENST00000384275 131 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 SRSF1P1-201ENST00000424058 520 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AKR1B10P1-201ENST00000425765 942 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 RPL7AP49-201ENST00000429522 581 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AL591438.1-201ENST00000433508 581 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 UBE2V2P3-201ENST00000433562 437 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 IMPA1P1-201ENST00000510718 842 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 MTND6P2-201ENST00000512226 524 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AP004607.2-201ENST00000533949 322 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC007683.2-201ENST00000624681 714 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC138627.1-204ENST00000641894 765 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.84□□□□□ -1.48
SIX2Q9NPC8 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
SIX2Q9NPC8 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.84□□□□□ -1.48
SIX2Q9NPC8 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC006600.2-201ENST00000624834 2506 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 RNA5SP122-201ENST00000384457 108 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 HSPD1P12-201ENST00000429127 1069 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AL390119.1-201ENST00000440329 312 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 RPL36AP39-201ENST00000445859 318 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC058823.1-201ENST00000485315 474 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC109481.1-201ENST00000509173 282 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 CDC42P3-201ENST00000518493 633 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC027369.5-201ENST00000533838 755 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 MIR1273E-201ENST00000581165 102 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC026367.3-201ENST00000619032 590 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AL357153.4-201ENST00000620487 1016 ntBASIC5.83□□□□□ -1.48
SIX2Q9NPC8 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.83□□□□□ -1.48
SIX2Q9NPC8 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 RN7SKP69-201ENST00000365390 305 ntBASIC5.82□□□□□ -1.48
SIX2Q9NPC8 OR4K12P-201ENST00000406538 961 ntBASIC5.82□□□□□ -1.48
SIX2Q9NPC8 PRUNEP1-201ENST00000425846 705 ntBASIC5.82□□□□□ -1.48
SIX2Q9NPC8 AL136231.1-201ENST00000429407 730 ntBASIC5.82□□□□□ -1.48
SIX2Q9NPC8 AC016772.1-201ENST00000444170 1261 ntBASIC5.82□□□□□ -1.48
SIX2Q9NPC8 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.82□□□□□ -1.48
SIX2Q9NPC8 RPL5P16-201ENST00000471467 790 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms