Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL359715.3-201ENST00000569267 2123 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 MIR3667-201ENST00000581025 74 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AC245389.1-201ENST00000605141 529 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AL353795.3-201ENST00000624351 5702 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AL008638.3-201ENST00000623027 5182 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 MIR1182-201ENST00000408363 97 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 RPL12P34-201ENST00000424532 479 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AL022319.1-201ENST00000458183 1167 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 RPL23AP1-201ENST00000428990 471 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 RNA5SP392-201ENST00000516905 112 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AP001880.2-201ENST00000538233 448 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AL139041.1-201ENST00000605480 610 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 GABRB3-204ENST00000541819 5934 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 PARP4P1-201ENST00000435945 2337 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 OR5M2P-201ENST00000529003 936 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AC027334.1-201ENST00000603257 310 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.16□□□□□ -1.58
VPS13AQ96RL7 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 ZBTB40-202ENST00000375647 8685 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AP002812.1-201ENST00000495378 474 ntBASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 GAPDHP56-201ENST00000506031 988 ntBASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 DHFRP1-201ENST00000579682 559 ntBASIC5.15□□□□□ -1.58
VPS13AQ96RL7 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 WDR87-201ENST00000303868 8847 ntAPPRIS P3 TSL 2 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AC097063.1-201ENST00000426714 1797 ntBASIC5.15□□□□□ -1.58
VPS13AQ96RL7 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
VPS13AQ96RL7 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS13AQ96RL7 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS13AQ96RL7 AC114774.1-201ENST00000507410 1770 ntBASIC5.15□□□□□ -1.59
VPS13AQ96RL7 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
VPS13AQ96RL7 DNAH1-201ENST00000420323 13104 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS13AQ96RL7 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS13AQ96RL7 RPS29P10-201ENST00000439197 166 ntBASIC5.15□□□□□ -1.59
VPS13AQ96RL7 AC021074.2-201ENST00000468434 172 ntBASIC5.15□□□□□ -1.59
VPS13AQ96RL7 AGGF1P7-201ENST00000562369 913 ntBASIC5.15□□□□□ -1.59
VPS13AQ96RL7 MIR132-201ENST00000591554 101 ntBASIC5.15□□□□□ -1.59
VPS13AQ96RL7 VN1R85P-201ENST00000601587 426 ntBASIC5.15□□□□□ -1.59
VPS13AQ96RL7 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS13AQ96RL7 AC108751.5-201ENST00000492880 1336 ntBASIC5.15□□□□□ -1.59
VPS13AQ96RL7 PCDH9-202ENST00000377865 5709 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS13AQ96RL7 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS13AQ96RL7 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 RNU1-85P-201ENST00000364127 164 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.14□□□□□ -1.59
VPS13AQ96RL7 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 CASKP1-201ENST00000412870 582 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC004074.1-201ENST00000421810 1063 ntBASIC5.14□□□□□ -1.59
VPS13AQ96RL7 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms