Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 AC245177.1-201ENST00000375625 2369 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 AC239585.1-201ENST00000375644 2369 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
MSX1P28360 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC7.12□□□□□ -1.27
MSX1P28360 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 EEF1A1P28-201ENST00000450915 1403 ntBASIC7.12□□□□□ -1.27
MSX1P28360 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 EEF1A1P3-201ENST00000417549 1385 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 ERAP2-201ENST00000379904 3219 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC7.12□□□□□ -1.27
MSX1P28360 AIFM1-205ENST00000460436 1925 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 RNU6-839P-201ENST00000363347 108 ntBASIC7.12□□□□□ -1.27
MSX1P28360 RNA5SP483-201ENST00000363431 118 ntBASIC7.12□□□□□ -1.27
MSX1P28360 Y_RNA.144-201ENST00000363521 113 ntBASIC7.12□□□□□ -1.27
MSX1P28360 RNU6-1339P-201ENST00000363574 91 ntBASIC7.12□□□□□ -1.27
MSX1P28360 RN7SKP50-201ENST00000364694 315 ntBASIC7.12□□□□□ -1.27
MSX1P28360 SNORA30B-201ENST00000365319 129 ntBASIC7.12□□□□□ -1.27
MSX1P28360 RNU6-1103P-201ENST00000384150 107 ntBASIC7.12□□□□□ -1.27
MSX1P28360 SNORA10B-201ENST00000384458 133 ntBASIC7.12□□□□□ -1.27
MSX1P28360 MIR181C-201ENST00000384881 110 ntBASIC7.12□□□□□ -1.27
MSX1P28360 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
MSX1P28360 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 AL356432.1-201ENST00000405809 419 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AC004987.3-201ENST00000413879 771 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC7.12□□□□□ -1.27
MSX1P28360 AL358942.1-201ENST00000418595 1178 ntBASIC7.12□□□□□ -1.27
MSX1P28360 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 AL355607.1-201ENST00000427745 295 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 AP001324.1-201ENST00000428553 399 ntBASIC7.12□□□□□ -1.27
MSX1P28360 FTO-202ENST00000431610 707 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 LINC00460-201ENST00000435024 631 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 OR5G3-201ENST00000435756 929 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
MSX1P28360 RPL37P21-201ENST00000435890 276 ntBASIC7.12□□□□□ -1.27
MSX1P28360 CR391992.1-201ENST00000438601 394 ntBASIC7.12□□□□□ -1.27
MSX1P28360 ARPC3P5-201ENST00000448802 534 ntBASIC7.12□□□□□ -1.27
MSX1P28360 RPL31P15-201ENST00000449770 338 ntBASIC7.12□□□□□ -1.27
MSX1P28360 RGS5-217ENST00000451759 835 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 DNAJC19P8-201ENST00000452887 259 ntBASIC7.12□□□□□ -1.27
MSX1P28360 FABP3P2-201ENST00000453169 399 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AL590490.1-201ENST00000455599 316 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 AC112219.1-201ENST00000491567 947 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC7.12□□□□□ -1.27
MSX1P28360 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC7.12□□□□□ -1.27
MSX1P28360 RNU6-1281P-201ENST00000516223 105 ntBASIC7.12□□□□□ -1.27
MSX1P28360 RNY4P37-201ENST00000516225 96 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AL135934.1-201ENST00000527684 537 ntTSL 2 BASIC7.12□□□□□ -1.27
MSX1P28360 AC022878.1-201ENST00000530684 149 ntBASIC7.12□□□□□ -1.27
MSX1P28360 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 AC084880.4-201ENST00000538405 577 ntTSL 2 BASIC7.12□□□□□ -1.27
MSX1P28360 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 AC011611.6-201ENST00000547483 255 ntBASIC7.12□□□□□ -1.27
MSX1P28360 NACA-211ENST00000548563 827 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 AC109460.4-201ENST00000561471 454 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC7.12□□□□□ -1.27
MSX1P28360 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 AC064805.1-203ENST00000577560 526 ntTSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 RN7SL42P-201ENST00000579786 294 ntBASIC7.12□□□□□ -1.27
MSX1P28360 KCTD2-206ENST00000581589 993 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 AC010761.2-202ENST00000582536 391 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 MIR4642-201ENST00000583943 82 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC7.12□□□□□ -1.27
MSX1P28360 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 AC125494.2-201ENST00000602431 657 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AL137190.1-201ENST00000603288 282 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AC112191.3-201ENST00000604371 277 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AL606760.4-201ENST00000617613 718 ntBASIC7.12□□□□□ -1.27
MSX1P28360 NPPA-AS1_1.1-201ENST00000622391 173 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AL158801.5-201ENST00000623123 465 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AC010653.3-201ENST00000635332 232 ntBASIC7.12□□□□□ -1.27
MSX1P28360 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 BCL2L11-224ENST00000639340 243 ntTSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC7.12□□□□□ -1.27
MSX1P28360 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.27
MSX1P28360 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 AC015689.2-201ENST00000528172 1738 ntBASIC7.12□□□□□ -1.27
MSX1P28360 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 RIPOR2-205ENST00000510784 3381 ntTSL 2 BASIC7.12□□□□□ -1.27
MSX1P28360 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 COX7C-203ENST00000509578 1584 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC7.12□□□□□ -1.27
MSX1P28360 AC011592.1-201ENST00000624647 3634 ntBASIC7.12□□□□□ -1.27
MSX1P28360 ZNF20-201ENST00000334213 3061 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
MSX1P28360 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 PDE7A-202ENST00000396642 2986 ntTSL 2 BASIC7.11□□□□□ -1.27
MSX1P28360 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC7.11□□□□□ -1.27
MSX1P28360 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC7.11□□□□□ -1.27
MSX1P28360 EPHA7-201ENST00000369297 1885 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms