Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 RPS7P6-201ENST00000485777 579 ntBASIC5.29□□□□□ -1.56
COL5A1P20908 AC105233.1-201ENST00000498840 781 ntBASIC5.29□□□□□ -1.56
COL5A1P20908 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.29□□□□□ -1.56
COL5A1P20908 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.29□□□□□ -1.56
COL5A1P20908 PMS2P3-207ENST00000529061 717 ntBASIC5.29□□□□□ -1.56
COL5A1P20908 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.29□□□□□ -1.56
COL5A1P20908 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.29□□□□□ -1.56
COL5A1P20908 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC5.29□□□□□ -1.56
COL5A1P20908 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.29□□□□□ -1.56
COL5A1P20908 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.29□□□□□ -1.56
COL5A1P20908 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
COL5A1P20908 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A1P20908 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL5A1P20908 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 RNVU1-6-201ENST00000364688 164 ntBASIC5.28□□□□□ -1.56
COL5A1P20908 TMEM183AP1-205ENST00000432739 290 ntBASIC5.28□□□□□ -1.56
COL5A1P20908 RPS3AP38-201ENST00000435889 763 ntBASIC5.28□□□□□ -1.56
COL5A1P20908 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 TPT1P13-201ENST00000449760 499 ntBASIC5.28□□□□□ -1.56
COL5A1P20908 DHFRP1-201ENST00000579682 559 ntBASIC5.28□□□□□ -1.56
COL5A1P20908 PRELID3BP3-201ENST00000584963 545 ntBASIC5.28□□□□□ -1.56
COL5A1P20908 AC060780.2-201ENST00000589047 198 ntBASIC5.28□□□□□ -1.56
COL5A1P20908 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 RNF138P2-201ENST00000603490 592 ntBASIC5.28□□□□□ -1.56
COL5A1P20908 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.28□□□□□ -1.56
COL5A1P20908 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.28□□□□□ -1.56
COL5A1P20908 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL5A1P20908 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.28□□□□□ -1.56
COL5A1P20908 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A1P20908 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL5A1P20908 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A1P20908 AL133388.1-201ENST00000404509 287 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.27□□□□□ -1.57
COL5A1P20908 RPL5P22-201ENST00000480199 884 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.27□□□□□ -1.57
COL5A1P20908 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.27□□□□□ -1.57
COL5A1P20908 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.27□□□□□ -1.57
COL5A1P20908 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.27□□□□□ -1.57
COL5A1P20908 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.27□□□□□ -1.57
COL5A1P20908 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.27□□□□□ -1.57
COL5A1P20908 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.27□□□□□ -1.57
COL5A1P20908 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.27□□□□□ -1.57
COL5A1P20908 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.27□□□□□ -1.57
COL5A1P20908 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
COL5A1P20908 AC087283.1-201ENST00000604029 1074 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 AC008745.1-201ENST00000604064 271 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A1P20908 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.27□□□□□ -1.57
COL5A1P20908 PANDAR-201ENST00000629595 1506 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
COL5A1P20908 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A1P20908 AL162456.1-201ENST00000634535 2006 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A1P20908 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A1P20908 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.27□□□□□ -1.57
COL5A1P20908 AP004607.3-201ENST00000530354 3915 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.27□□□□□ -1.57
COL5A1P20908 MFSD8-216ENST00000641147 4009 ntBASIC5.27□□□□□ -1.57
COL5A1P20908 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
COL5A1P20908 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC5.27□□□□□ -1.57
COL5A1P20908 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
COL5A1P20908 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
COL5A1P20908 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A1P20908 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC5.27□□□□□ -1.57
COL5A1P20908 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A1P20908 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
COL5A1P20908 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A1P20908 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms