Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
BRCA1P38398 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.57□□□□□ -1.36
BRCA1P38398 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
BRCA1P38398 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.57□□□□□ -1.36
BRCA1P38398 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 SNORA70.2-201ENST00000364506 135 ntBASIC6.57□□□□□ -1.36
BRCA1P38398 MIR105-1-201ENST00000385222 81 ntBASIC6.57□□□□□ -1.36
BRCA1P38398 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
BRCA1P38398 AC092570.3-201ENST00000420113 693 ntBASIC6.57□□□□□ -1.36
BRCA1P38398 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.57□□□□□ -1.36
BRCA1P38398 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.57□□□□□ -1.36
BRCA1P38398 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC6.57□□□□□ -1.36
BRCA1P38398 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.57□□□□□ -1.36
BRCA1P38398 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.57□□□□□ -1.36
BRCA1P38398 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.57□□□□□ -1.36
BRCA1P38398 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.57□□□□□ -1.36
BRCA1P38398 AC098935.2-201ENST00000604222 466 ntBASIC6.57□□□□□ -1.36
BRCA1P38398 MEMO1P5-201ENST00000604810 406 ntBASIC6.57□□□□□ -1.36
BRCA1P38398 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
BRCA1P38398 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
BRCA1P38398 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.57□□□□□ -1.36
BRCA1P38398 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.57□□□□□ -1.36
BRCA1P38398 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
BRCA1P38398 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
BRCA1P38398 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 SNORD56.6-201ENST00000384569 71 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 RPL18P10-201ENST00000425606 538 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.56□□□□□ -1.36
BRCA1P38398 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC6.56□□□□□ -1.36
BRCA1P38398 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC6.56□□□□□ -1.36
BRCA1P38398 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.56□□□□□ -1.36
BRCA1P38398 AC104634.1-201ENST00000452720 462 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 AC058823.1-201ENST00000485315 474 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 RN7SL423P-201ENST00000486202 304 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 FTH1P8-201ENST00000498161 514 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 AC140172.1-201ENST00000502928 141 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC6.56□□□□□ -1.36
BRCA1P38398 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 GCSHP4-201ENST00000538792 439 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 OR11H3P-201ENST00000554547 982 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 AC091042.1-201ENST00000579213 173 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.56□□□□□ -1.36
BRCA1P38398 AC135068.5-201ENST00000624197 983 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 AC091046.3-201ENST00000631455 1574 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.56□□□□□ -1.36
BRCA1P38398 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.56□□□□□ -1.36
BRCA1P38398 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
BRCA1P38398 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.56□□□□□ -1.36
BRCA1P38398 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 HSPD1P7-201ENST00000447985 1686 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
BRCA1P38398 RPL32P3-201ENST00000359025 275 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 RNA5SP113-201ENST00000410486 84 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 OR2AM1P-201ENST00000422137 422 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 AC007568.1-201ENST00000422912 471 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC6.56□□□□□ -1.36
BRCA1P38398 AL596266.1-201ENST00000448132 400 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 AC021106.1-201ENST00000509020 1058 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
BRCA1P38398 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.56□□□□□ -1.36
BRCA1P38398 AL513327.3-201ENST00000602618 469 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 MTCO1P1-201ENST00000624263 1081 ntBASIC6.56□□□□□ -1.36
BRCA1P38398 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
BRCA1P38398 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 AC079777.1-201ENST00000623836 1953 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms