Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL450996.1-201ENST00000445574 1202 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 RN7SL273P-201ENST00000481561 299 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.51□□□□□ -1.53
SHMT2P34897 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.51□□□□□ -1.53
SHMT2P34897 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.51□□□□□ -1.53
SHMT2P34897 AL049872.1-201ENST00000556323 322 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 AC105036.1-201ENST00000566222 271 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 AC009962.1-201ENST00000567327 3813 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.51□□□□□ -1.53
SHMT2P34897 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.51□□□□□ -1.53
SHMT2P34897 RN7SL787P-201ENST00000613000 284 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 AC005618.4-201ENST00000625053 554 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 AC008691.1-209ENST00000642094 814 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 AC007842.1-201ENST00000597336 2039 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.51□□□□□ -1.53
SHMT2P34897 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.51□□□□□ -1.53
SHMT2P34897 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
SHMT2P34897 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.51□□□□□ -1.53
SHMT2P34897 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.5□□□□□ -1.53
SHMT2P34897 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.5□□□□□ -1.53
SHMT2P34897 AP001029.2-203ENST00000589795 4910 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
SHMT2P34897 AC020633.1-201ENST00000468439 2247 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 MIR323A-201ENST00000362199 86 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 RN7SKP81-201ENST00000365603 331 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.5□□□□□ -1.53
SHMT2P34897 RN7SKP279-201ENST00000411383 298 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 RPS6P23-201ENST00000413224 722 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 NENFP1-201ENST00000419476 466 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.5□□□□□ -1.53
SHMT2P34897 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.5□□□□□ -1.53
SHMT2P34897 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.5□□□□□ -1.53
SHMT2P34897 EEF1B2P6-201ENST00000445713 673 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 YWHAEP1-201ENST00000453697 763 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 RPS27AP2-201ENST00000457576 465 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
SHMT2P34897 RPS7P6-201ENST00000485777 579 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.5□□□□□ -1.53
SHMT2P34897 AC138866.2-201ENST00000508650 584 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 AC026782.2-201ENST00000510845 636 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.5□□□□□ -1.53
SHMT2P34897 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.5□□□□□ -1.53
SHMT2P34897 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.5□□□□□ -1.53
SHMT2P34897 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.5□□□□□ -1.53
SHMT2P34897 AGGF1P7-201ENST00000562369 913 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.5□□□□□ -1.53
SHMT2P34897 MIR4505-201ENST00000582238 73 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.5□□□□□ -1.53
SHMT2P34897 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC5.5□□□□□ -1.53
SHMT2P34897 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.5□□□□□ -1.53
SHMT2P34897 RNA5SP440-201ENST00000612665 119 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.5□□□□□ -1.53
SHMT2P34897 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.5□□□□□ -1.53
SHMT2P34897 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.5□□□□□ -1.53
SHMT2P34897 AC007683.2-201ENST00000624681 714 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 LINC01963-201ENST00000562038 3148 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 BCORP1-203ENST00000513194 5093 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
SHMT2P34897 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SHMT2P34897 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.5□□□□□ -1.53
SHMT2P34897 SRRM1P3-201ENST00000426911 2678 ntBASIC5.5□□□□□ -1.53
SHMT2P34897 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHMT2P34897 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 YES1P1-201ENST00000418510 1628 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHMT2P34897 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SHMT2P34897 RN7SKP69-201ENST00000365390 305 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 RNA5SP131-201ENST00000365452 119 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 U3.23-201ENST00000391132 200 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 GAPDHP42-201ENST00000406848 981 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 RN7SKP293-201ENST00000411389 296 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.49□□□□□ -1.53
SHMT2P34897 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.49□□□□□ -1.53
SHMT2P34897 RPSAP41-201ENST00000439695 860 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 AC023271.1-201ENST00000445936 1090 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 MRE11P1-201ENST00000464884 2127 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 AC105420.1-201ENST00000504389 582 ntBASIC5.49□□□□□ -1.53
SHMT2P34897 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms