Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RAD1P1-201ENST00000231383 813 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 Y_RNA.77-201ENST00000362962 107 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 RNU6-152P-201ENST00000384037 107 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 RNU1-46P-201ENST00000384425 164 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL359694.1-201ENST00000403247 604 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 RNU6ATAC25P-201ENST00000408798 117 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 RN7SKP278-201ENST00000410504 342 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 RPL18AP14-201ENST00000417685 526 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AHCYP8-201ENST00000425108 209 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 Z68868.1-201ENST00000429048 544 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 MRPS10P2-201ENST00000431226 381 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 SUMO2P8-201ENST00000434672 286 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 LDHAP2-201ENST00000437325 985 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL121601.2-201ENST00000438019 707 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC098614.3-201ENST00000438957 440 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 RPS10P14-201ENST00000440748 502 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL360221.1-201ENST00000445989 335 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL592447.1-201ENST00000447592 540 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL356390.1-201ENST00000455684 397 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL133480.2-201ENST00000456723 487 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC006518.2-201ENST00000542513 940 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC007068.2-201ENST00000543168 395 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC010287.1-201ENST00000566916 357 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 ANKRD36BP1-202ENST00000604892 1417 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL445222.1-201ENST00000607259 628 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AP002360.3-201ENST00000607673 710 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AL356752.1-201ENST00000615844 593 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 U6atac.1-201ENST00000616025 117 ntBASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC39Q9UFE4 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 KARSP3-201ENST00000571212 1504 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 CASC19-255ENST00000641733 1385 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 USP46-202ENST00000451218 4622 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 RNA5SP321-201ENST00000362722 111 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 RNA5SP355-201ENST00000365317 135 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 MIR27A-201ENST00000385073 78 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 LYPLA1P3-201ENST00000402650 695 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 FCF1P5-201ENST00000406490 482 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 HMGB1P49-201ENST00000418882 569 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 GTF2IP7-202ENST00000436677 309 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 XKRY2-201ENST00000442362 1093 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 FDX1P2-201ENST00000450769 375 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 OR7E22P-201ENST00000478335 1035 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 NPM1P27-201ENST00000502784 830 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 XKRY-201ENST00000510392 1100 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 OR52H2P-201ENST00000514607 902 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 IGHVIII-47-1-201ENST00000518187 331 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC130366.1-201ENST00000526505 1192 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AP005205.1-201ENST00000563503 508 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 MIR378H-201ENST00000579966 83 ntBASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms