Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 BMS1P17-202ENST00000416720 316 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AL662874.1-201ENST00000426065 230 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC006455.6-201ENST00000426192 893 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC016027.5-201ENST00000427227 210 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 PTMAP6-201ENST00000439110 327 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC007386.1-201ENST00000455212 582 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC022215.1-201ENST00000481770 362 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AL133372.1-201ENST00000493565 745 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC006499.3-201ENST00000506077 748 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 RN7SKP288-201ENST00000516227 268 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 SNORA43.3-201ENST00000517240 103 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AP001804.1-201ENST00000526868 919 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC004825.1-201ENST00000555068 586 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC087821.1-201ENST00000623639 567 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AL590763.1-201ENST00000398297 1545 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 GTF2IP4-201ENST00000453092 2054 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 AC068769.1-201ENST00000474767 2426 ntBASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HDDC3Q8N4P3 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 THAP12P8-201ENST00000447914 2115 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 MTCO1P7-201ENST00000419523 1542 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AL360271.1-201ENST00000395679 510 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 RNU2-22P-201ENST00000411266 212 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC096644.3-201ENST00000416788 338 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PTP4A1P1-201ENST00000420539 515 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AL603882.1-201ENST00000463059 681 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 RPS23P6-201ENST00000466136 431 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AL157777.1-201ENST00000468100 304 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC098583.1-201ENST00000480875 255 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 RN7SL30P-201ENST00000488416 306 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC113398.2-201ENST00000507630 558 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 SCARNA6.1-201ENST00000516989 238 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 AC073869.7-201ENST00000640874 297 ntBASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
HDDC3Q8N4P3 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 MIR1286-201ENST00000408112 78 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AL022331.1-201ENST00000429025 477 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms