Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC6.55□□□□□ -1.36
RNF4P78317 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 AC090181.3-201ENST00000624777 1514 ntBASIC6.55□□□□□ -1.36
RNF4P78317 AC137056.2-201ENST00000624055 1958 ntBASIC6.55□□□□□ -1.36
RNF4P78317 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
RNF4P78317 OR5M2P-202ENST00000641241 4242 ntBASIC6.55□□□□□ -1.36
RNF4P78317 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC6.55□□□□□ -1.36
RNF4P78317 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 CDY7P-201ENST00000429883 1604 ntBASIC6.54□□□□□ -1.36
RNF4P78317 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 AC022819.1-201ENST00000563495 3910 ntBASIC6.54□□□□□ -1.36
RNF4P78317 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 AL049634.1-201ENST00000453770 1720 ntBASIC6.54□□□□□ -1.36
RNF4P78317 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.54□□□□□ -1.36
RNF4P78317 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 METTL21EP-201ENST00000298105 713 ntBASIC6.54□□□□□ -1.36
RNF4P78317 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 RNU4-21P-201ENST00000362802 126 ntBASIC6.54□□□□□ -1.36
RNF4P78317 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
RNF4P78317 RNU6-253P-201ENST00000384730 105 ntBASIC6.54□□□□□ -1.36
RNF4P78317 RNU1-56P-201ENST00000391303 164 ntBASIC6.54□□□□□ -1.36
RNF4P78317 ATP5F1P4-201ENST00000397288 746 ntBASIC6.54□□□□□ -1.36
RNF4P78317 PDCL3P5-201ENST00000398028 722 ntBASIC6.54□□□□□ -1.36
RNF4P78317 ZNF603P-201ENST00000405613 487 ntBASIC6.54□□□□□ -1.36
RNF4P78317 ZNF37CP-201ENST00000406795 241 ntBASIC6.54□□□□□ -1.36
RNF4P78317 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 AL161449.1-201ENST00000414531 1199 ntBASIC6.54□□□□□ -1.36
RNF4P78317 RPL36P18-201ENST00000419316 318 ntBASIC6.54□□□□□ -1.36
RNF4P78317 GSTA6P-201ENST00000424144 582 ntBASIC6.54□□□□□ -1.36
RNF4P78317 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC6.54□□□□□ -1.36
RNF4P78317 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC6.54□□□□□ -1.36
RNF4P78317 MED14P1-201ENST00000430517 648 ntBASIC6.54□□□□□ -1.36
RNF4P78317 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.54□□□□□ -1.36
RNF4P78317 AC002542.1-201ENST00000440683 193 ntBASIC6.54□□□□□ -1.36
RNF4P78317 RPS19P6-201ENST00000441327 433 ntBASIC6.54□□□□□ -1.36
RNF4P78317 RPSAP40-201ENST00000442343 891 ntBASIC6.54□□□□□ -1.36
RNF4P78317 RPS26P30-201ENST00000443431 335 ntBASIC6.54□□□□□ -1.36
RNF4P78317 OR51P1P-201ENST00000447547 942 ntBASIC6.54□□□□□ -1.36
RNF4P78317 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 AC079776.3-201ENST00000450665 370 ntBASIC6.54□□□□□ -1.36
RNF4P78317 ST13P21-201ENST00000453250 1098 ntBASIC6.54□□□□□ -1.36
RNF4P78317 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 OR7E7P-201ENST00000455678 1012 ntBASIC6.54□□□□□ -1.36
RNF4P78317 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC6.54□□□□□ -1.36
RNF4P78317 AL096803.1-201ENST00000456921 1021 ntBASIC6.54□□□□□ -1.36
RNF4P78317 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC6.54□□□□□ -1.36
RNF4P78317 AC104763.1-201ENST00000475274 360 ntBASIC6.54□□□□□ -1.36
RNF4P78317 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC6.54□□□□□ -1.36
RNF4P78317 SSX8-201ENST00000506270 579 ntBASIC6.54□□□□□ -1.36
RNF4P78317 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.54□□□□□ -1.36
RNF4P78317 OR4A6P-201ENST00000534364 970 ntBASIC6.54□□□□□ -1.36
RNF4P78317 MTND1P15-201ENST00000579262 949 ntBASIC6.54□□□□□ -1.36
RNF4P78317 MIR378H-201ENST00000579966 83 ntBASIC6.54□□□□□ -1.36
RNF4P78317 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.54□□□□□ -1.36
RNF4P78317 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC6.54□□□□□ -1.36
RNF4P78317 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 AC124312.6-202ENST00000623624 418 ntBASIC6.54□□□□□ -1.36
RNF4P78317 AC005609.4-201ENST00000625071 447 ntBASIC6.54□□□□□ -1.36
RNF4P78317 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
RNF4P78317 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
RNF4P78317 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.54□□□□□ -1.36
RNF4P78317 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC6.54□□□□□ -1.36
RNF4P78317 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms