Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.18□□□□□ -1.42
TPM4P67936 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.18□□□□□ -1.42
TPM4P67936 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.18□□□□□ -1.42
TPM4P67936 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 MIR551B-201ENST00000384984 96 ntBASIC6.18□□□□□ -1.42
TPM4P67936 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 PCNPP4-201ENST00000414817 517 ntBASIC6.18□□□□□ -1.42
TPM4P67936 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC6.18□□□□□ -1.42
TPM4P67936 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC6.18□□□□□ -1.42
TPM4P67936 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.18□□□□□ -1.42
TPM4P67936 RPL5P7-201ENST00000444235 813 ntBASIC6.18□□□□□ -1.42
TPM4P67936 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.18□□□□□ -1.42
TPM4P67936 UBFD1P1-201ENST00000473259 814 ntBASIC6.18□□□□□ -1.42
TPM4P67936 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.18□□□□□ -1.42
TPM4P67936 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC6.18□□□□□ -1.42
TPM4P67936 RNA5SP96-201ENST00000516041 107 ntBASIC6.18□□□□□ -1.42
TPM4P67936 SCARNA6.1-201ENST00000516989 238 ntBASIC6.18□□□□□ -1.42
TPM4P67936 IGLV3-24-201ENST00000517477 197 ntBASIC6.18□□□□□ -1.42
TPM4P67936 IGHVIII-11-1-201ENST00000522733 267 ntBASIC6.18□□□□□ -1.42
TPM4P67936 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.18□□□□□ -1.42
TPM4P67936 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.18□□□□□ -1.42
TPM4P67936 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.18□□□□□ -1.42
TPM4P67936 AC006530.1-201ENST00000555980 571 ntBASIC6.18□□□□□ -1.42
TPM4P67936 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.18□□□□□ -1.42
TPM4P67936 AC106730.2-201ENST00000566641 540 ntBASIC6.18□□□□□ -1.42
TPM4P67936 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.18□□□□□ -1.42
TPM4P67936 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TPM4P67936 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
TPM4P67936 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.17□□□□□ -1.42
TPM4P67936 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
TPM4P67936 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TPM4P67936 GAPDHP24-201ENST00000328713 983 ntBASIC6.17□□□□□ -1.42
TPM4P67936 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.17□□□□□ -1.42
TPM4P67936 AL159987.1-201ENST00000347911 293 ntBASIC6.17□□□□□ -1.42
TPM4P67936 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TPM4P67936 RN7SKP74-201ENST00000362849 309 ntBASIC6.17□□□□□ -1.42
TPM4P67936 OR1L6-202ENST00000373684 1044 ntBASIC6.17□□□□□ -1.42
TPM4P67936 AL096711.1-201ENST00000404780 554 ntBASIC6.17□□□□□ -1.42
TPM4P67936 MRPL53P1-201ENST00000414323 319 ntBASIC6.17□□□□□ -1.42
TPM4P67936 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TPM4P67936 AK4P4-201ENST00000419465 646 ntBASIC6.17□□□□□ -1.42
TPM4P67936 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.17□□□□□ -1.42
TPM4P67936 HSPE1P27-201ENST00000430808 296 ntBASIC6.17□□□□□ -1.42
TPM4P67936 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.17□□□□□ -1.42
TPM4P67936 RPL19P16-201ENST00000433839 588 ntBASIC6.17□□□□□ -1.42
TPM4P67936 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC6.17□□□□□ -1.42
TPM4P67936 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC6.17□□□□□ -1.42
TPM4P67936 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.17□□□□□ -1.42
TPM4P67936 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.17□□□□□ -1.42
TPM4P67936 BCAS2P1-201ENST00000528022 632 ntBASIC6.17□□□□□ -1.42
TPM4P67936 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TPM4P67936 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.17□□□□□ -1.42
TPM4P67936 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.17□□□□□ -1.42
TPM4P67936 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.17□□□□□ -1.42
TPM4P67936 MIR4472-2-201ENST00000582069 67 ntBASIC6.17□□□□□ -1.42
TPM4P67936 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TPM4P67936 MIR6793-201ENST00000612376 63 ntBASIC6.17□□□□□ -1.42
TPM4P67936 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.17□□□□□ -1.42
TPM4P67936 CASC19-238ENST00000641523 1558 ntBASIC6.17□□□□□ -1.42
TPM4P67936 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
TPM4P67936 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TPM4P67936 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.17□□□□□ -1.42
TPM4P67936 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
TPM4P67936 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.16□□□□□ -1.42
TPM4P67936 AC100757.1-201ENST00000616872 1835 ntBASIC6.16□□□□□ -1.42
TPM4P67936 AC099654.3-201ENST00000447087 1546 ntBASIC6.16□□□□□ -1.42
TPM4P67936 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.16□□□□□ -1.42
TPM4P67936 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.16□□□□□ -1.42
TPM4P67936 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC6.16□□□□□ -1.42
TPM4P67936 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 RNA5SP30-201ENST00000365552 115 ntBASIC6.16□□□□□ -1.42
TPM4P67936 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.16□□□□□ -1.42
TPM4P67936 SNORA51.9-201ENST00000384295 124 ntBASIC6.16□□□□□ -1.42
TPM4P67936 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.16□□□□□ -1.42
TPM4P67936 RPSAP32-201ENST00000432681 526 ntBASIC6.16□□□□□ -1.42
TPM4P67936 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TPM4P67936 AC009963.3-201ENST00000458090 486 ntBASIC6.16□□□□□ -1.42
TPM4P67936 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC6.16□□□□□ -1.42
TPM4P67936 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.16□□□□□ -1.42
TPM4P67936 ASNSP4-201ENST00000511103 447 ntBASIC6.16□□□□□ -1.42
TPM4P67936 RN7SKP238-201ENST00000516483 249 ntBASIC6.16□□□□□ -1.42
TPM4P67936 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC6.16□□□□□ -1.42
TPM4P67936 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.16□□□□□ -1.42
TPM4P67936 HMGN2P36-201ENST00000529541 409 ntBASIC6.16□□□□□ -1.42
TPM4P67936 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC6.16□□□□□ -1.42
TPM4P67936 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.16□□□□□ -1.42
TPM4P67936 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms