Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
NUP98P52948 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
NUP98P52948 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
NUP98P52948 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
NUP98P52948 Y_RNA.625-201ENST00000411256 107 ntBASIC6.71□□□□□ -1.33
NUP98P52948 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC6.71□□□□□ -1.33
NUP98P52948 DDX39BP1-205ENST00000422507 192 ntBASIC6.71□□□□□ -1.33
NUP98P52948 H2AFZP6-201ENST00000444403 394 ntBASIC6.71□□□□□ -1.33
NUP98P52948 AC104634.1-201ENST00000452720 462 ntBASIC6.71□□□□□ -1.33
NUP98P52948 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.71□□□□□ -1.33
NUP98P52948 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.71□□□□□ -1.33
NUP98P52948 CR383656.6-201ENST00000550518 394 ntBASIC6.71□□□□□ -1.33
NUP98P52948 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC6.71□□□□□ -1.33
NUP98P52948 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC6.71□□□□□ -1.33
NUP98P52948 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC6.71□□□□□ -1.33
NUP98P52948 AC009237.13-201ENST00000603193 276 ntBASIC6.71□□□□□ -1.33
NUP98P52948 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.71□□□□□ -1.33
NUP98P52948 AC093799.2-201ENST00000610062 578 ntBASIC6.71□□□□□ -1.33
NUP98P52948 AC073342.3-201ENST00000624211 193 ntBASIC6.71□□□□□ -1.33
NUP98P52948 AL596275.2-208ENST00000641192 594 ntBASIC6.71□□□□□ -1.33
NUP98P52948 AC073869.8-201ENST00000641806 335 ntBASIC6.71□□□□□ -1.33
NUP98P52948 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
NUP98P52948 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
NUP98P52948 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.33
NUP98P52948 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
NUP98P52948 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
NUP98P52948 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
NUP98P52948 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.33
NUP98P52948 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.71□□□□□ -1.34
NUP98P52948 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC6.71□□□□□ -1.34
NUP98P52948 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.71□□□□□ -1.34
NUP98P52948 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.71□□□□□ -1.34
NUP98P52948 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.71□□□□□ -1.34
NUP98P52948 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.71□□□□□ -1.34
NUP98P52948 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 RNA5SP443-201ENST00000363083 132 ntBASIC6.71□□□□□ -1.34
NUP98P52948 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.71□□□□□ -1.34
NUP98P52948 AL645733.1-201ENST00000402250 217 ntBASIC6.71□□□□□ -1.34
NUP98P52948 RPS11P7-201ENST00000442125 465 ntBASIC6.71□□□□□ -1.34
NUP98P52948 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.71□□□□□ -1.34
NUP98P52948 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
NUP98P52948 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC6.71□□□□□ -1.34
NUP98P52948 CDH12P4-201ENST00000517835 295 ntBASIC6.71□□□□□ -1.34
NUP98P52948 CDH12P3-201ENST00000517935 295 ntBASIC6.71□□□□□ -1.34
NUP98P52948 CDH12P1-201ENST00000518435 295 ntBASIC6.71□□□□□ -1.34
NUP98P52948 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC6.71□□□□□ -1.34
NUP98P52948 OR4A43P-201ENST00000532938 908 ntBASIC6.71□□□□□ -1.34
NUP98P52948 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC6.71□□□□□ -1.34
NUP98P52948 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.71□□□□□ -1.34
NUP98P52948 SETP3-201ENST00000581726 813 ntBASIC6.71□□□□□ -1.34
NUP98P52948 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.71□□□□□ -1.34
NUP98P52948 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.71□□□□□ -1.34
NUP98P52948 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC6.71□□□□□ -1.34
NUP98P52948 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
NUP98P52948 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
NUP98P52948 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 AC016745.2-201ENST00000608834 3443 ntBASIC6.7□□□□□ -1.34
NUP98P52948 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.7□□□□□ -1.34
NUP98P52948 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.7□□□□□ -1.34
NUP98P52948 AL158152.1-201ENST00000602652 1435 ntBASIC6.7□□□□□ -1.34
NUP98P52948 RNA5SP455-201ENST00000365190 119 ntBASIC6.7□□□□□ -1.34
NUP98P52948 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 AC093162.1-201ENST00000419682 124 ntBASIC6.7□□□□□ -1.34
NUP98P52948 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.7□□□□□ -1.34
NUP98P52948 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC6.7□□□□□ -1.34
NUP98P52948 Z92846.1-201ENST00000456203 268 ntBASIC6.7□□□□□ -1.34
NUP98P52948 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.7□□□□□ -1.34
NUP98P52948 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.7□□□□□ -1.34
NUP98P52948 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
NUP98P52948 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.7□□□□□ -1.34
NUP98P52948 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
NUP98P52948 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC6.7□□□□□ -1.34
NUP98P52948 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
NUP98P52948 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC6.7□□□□□ -1.34
NUP98P52948 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
NUP98P52948 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms