Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AP000797.2-201ENST00000475768 606 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC7.05□□□□□ -1.28
COL18A1P39060 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC7.05□□□□□ -1.28
COL18A1P39060 XIST-210ENST00000602863 775 ntTSL 3 BASIC7.05□□□□□ -1.28
COL18A1P39060 MEMO1P5-201ENST00000604810 406 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL18A1P39060 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL18A1P39060 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC7.05□□□□□ -1.28
COL18A1P39060 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL18A1P39060 ZNF969P-201ENST00000510345 2341 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL18A1P39060 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL18A1P39060 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL18A1P39060 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC7.05□□□□□ -1.28
COL18A1P39060 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC7.05□□□□□ -1.28
COL18A1P39060 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC7.05□□□□□ -1.28
COL18A1P39060 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC7.05□□□□□ -1.28
COL18A1P39060 RPL36AP15-201ENST00000444514 266 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 NDUFA5P8-201ENST00000449019 346 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 AC092905.1-201ENST00000467527 949 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 KRTAP5-14P-201ENST00000502328 121 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC7.05□□□□□ -1.28
COL18A1P39060 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC7.05□□□□□ -1.28
COL18A1P39060 MIR4737-201ENST00000583979 81 ntBASIC7.05□□□□□ -1.28
COL18A1P39060 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL18A1P39060 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
COL18A1P39060 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL18A1P39060 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL18A1P39060 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC7.04□□□□□ -1.28
COL18A1P39060 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL18A1P39060 MIR1182-201ENST00000408363 97 ntBASIC7.04□□□□□ -1.28
COL18A1P39060 AC092651.1-201ENST00000426110 312 ntBASIC7.04□□□□□ -1.28
COL18A1P39060 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC7.04□□□□□ -1.28
COL18A1P39060 AC016712.1-201ENST00000431088 378 ntBASIC7.04□□□□□ -1.28
COL18A1P39060 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC7.04□□□□□ -1.28
COL18A1P39060 RPL7P11-201ENST00000437586 658 ntBASIC7.04□□□□□ -1.28
COL18A1P39060 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC7.04□□□□□ -1.28
COL18A1P39060 HNRNPDLP2-201ENST00000455248 751 ntBASIC7.04□□□□□ -1.28
COL18A1P39060 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC7.04□□□□□ -1.28
COL18A1P39060 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC7.04□□□□□ -1.28
COL18A1P39060 ALB-220ENST00000621628 1606 ntTSL 5 BASIC7.04□□□□□ -1.28
COL18A1P39060 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL18A1P39060 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
COL18A1P39060 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC7.04□□□□□ -1.28
COL18A1P39060 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL18A1P39060 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC7.04□□□□□ -1.28
COL18A1P39060 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL18A1P39060 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC7.04□□□□□ -1.28
COL18A1P39060 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL18A1P39060 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC7.03□□□□□ -1.28
COL18A1P39060 JPX-212ENST00000639185 9658 ntTSL 5 BASIC7.03□□□□□ -1.28
COL18A1P39060 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 AL359195.2-201ENST00000623657 4412 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC7.03□□□□□ -1.28
COL18A1P39060 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC7.03□□□□□ -1.28
COL18A1P39060 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC7.03□□□□□ -1.28
COL18A1P39060 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC7.03□□□□□ -1.28
COL18A1P39060 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC7.03□□□□□ -1.28
COL18A1P39060 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC7.03□□□□□ -1.28
COL18A1P39060 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC7.03□□□□□ -1.28
COL18A1P39060 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC7.03□□□□□ -1.28
COL18A1P39060 OR4A43P-201ENST00000532938 908 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 AL512310.9-201ENST00000553311 948 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC7.03□□□□□ -1.28
COL18A1P39060 RPL27-207ENST00000590864 569 ntTSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 EIF3FP1-201ENST00000613970 806 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 AL450226.2-201ENST00000622913 439 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL18A1P39060 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC7.03□□□□□ -1.28
COL18A1P39060 AC132825.1-201ENST00000463573 2247 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL18A1P39060 ATP5A1P4-201ENST00000556888 1605 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 AC232271.1-201ENST00000602455 2715 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC7.03□□□□□ -1.28
COL18A1P39060 NPM1P40-201ENST00000412758 733 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 RPL12P17-201ENST00000432393 498 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 AC073264.2-201ENST00000448886 166 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 RN7SL188P-201ENST00000469842 285 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC7.03□□□□□ -1.28
COL18A1P39060 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC7.03□□□□□ -1.28
COL18A1P39060 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC7.03□□□□□ -1.28
COL18A1P39060 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC7.03□□□□□ -1.28
COL18A1P39060 SCARNA20.4-201ENST00000516969 131 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 GCSHP4-201ENST00000538792 439 ntBASIC7.03□□□□□ -1.28
COL18A1P39060 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL18A1P39060 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms