Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
SCN4AP35499 AL049779.3-201ENST00000557141 606 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 DPPA3P2-202ENST00000557188 1219 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 MIR5096-201ENST00000583713 70 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 AC068790.4-201ENST00000602474 263 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC6.57□□□□□ -1.36
SCN4AP35499 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 AC073365.1-203ENST00000641055 1992 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
SCN4AP35499 LINC02035-201ENST00000610128 5476 ntBASIC6.57□□□□□ -1.36
SCN4AP35499 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.57□□□□□ -1.36
SCN4AP35499 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.56□□□□□ -1.36
SCN4AP35499 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
SCN4AP35499 AL022323.4-201ENST00000623980 13120 ntBASIC6.56□□□□□ -1.36
SCN4AP35499 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.56□□□□□ -1.36
SCN4AP35499 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.56□□□□□ -1.36
SCN4AP35499 AC092724.1-201ENST00000624623 3397 ntBASIC6.56□□□□□ -1.36
SCN4AP35499 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
SCN4AP35499 RPS3AP38-201ENST00000435889 763 ntBASIC6.56□□□□□ -1.36
SCN4AP35499 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.56□□□□□ -1.36
SCN4AP35499 AC073264.2-201ENST00000448886 166 ntBASIC6.56□□□□□ -1.36
SCN4AP35499 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.56□□□□□ -1.36
SCN4AP35499 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.56□□□□□ -1.36
SCN4AP35499 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.56□□□□□ -1.36
SCN4AP35499 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.56□□□□□ -1.36
SCN4AP35499 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.56□□□□□ -1.36
SCN4AP35499 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.56□□□□□ -1.36
SCN4AP35499 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.56□□□□□ -1.36
SCN4AP35499 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SCN4AP35499 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SCN4AP35499 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
SCN4AP35499 HSPD1P8-201ENST00000400121 1658 ntBASIC6.56□□□□□ -1.36
SCN4AP35499 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
SCN4AP35499 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SCN4AP35499 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.55□□□□□ -1.36
SCN4AP35499 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SCN4AP35499 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
SCN4AP35499 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.55□□□□□ -1.36
SCN4AP35499 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.55□□□□□ -1.36
SCN4AP35499 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.55□□□□□ -1.36
SCN4AP35499 AC091153.1-201ENST00000466297 402 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.55□□□□□ -1.36
SCN4AP35499 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC6.55□□□□□ -1.36
SCN4AP35499 OR5AN2P-201ENST00000534535 896 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 AC005000.1-201ENST00000536192 288 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.55□□□□□ -1.36
SCN4AP35499 AL356752.1-201ENST00000615844 593 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 AC068831.8-201ENST00000620171 435 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 PWAR1-201ENST00000624188 2414 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SCN4AP35499 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SCN4AP35499 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
SCN4AP35499 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
SCN4AP35499 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.55□□□□□ -1.36
SCN4AP35499 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SCN4AP35499 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SCN4AP35499 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.55□□□□□ -1.36
SCN4AP35499 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 AC073072.2-201ENST00000447425 348 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 AL513533.1-201ENST00000453728 415 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 RPS23P7-201ENST00000466210 444 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 MIR2117-201ENST00000516780 80 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SCN4AP35499 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.55□□□□□ -1.36
SCN4AP35499 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.55□□□□□ -1.36
SCN4AP35499 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.55□□□□□ -1.36
SCN4AP35499 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.55□□□□□ -1.36
SCN4AP35499 AC060766.1-201ENST00000590824 627 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 AC004836.1-201ENST00000623032 634 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SCN4AP35499 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC6.55□□□□□ -1.36
SCN4AP35499 AL162456.1-201ENST00000634535 2006 ntBASIC6.55□□□□□ -1.36
SCN4AP35499 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SCN4AP35499 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SCN4AP35499 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SCN4AP35499 AP002991.2-201ENST00000623807 2801 ntBASIC6.54□□□□□ -1.36
SCN4AP35499 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.54□□□□□ -1.36
SCN4AP35499 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SCN4AP35499 AC010401.2-201ENST00000575137 4934 ntBASIC6.54□□□□□ -1.36
SCN4AP35499 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SCN4AP35499 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.54□□□□□ -1.36
SCN4AP35499 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SCN4AP35499 MFSD8-239ENST00000641590 2479 ntBASIC6.54□□□□□ -1.36
SCN4AP35499 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.54□□□□□ -1.36
SCN4AP35499 PRPF38AP2-201ENST00000438179 851 ntBASIC6.54□□□□□ -1.36
SCN4AP35499 snoU13.20-201ENST00000459180 104 ntBASIC6.54□□□□□ -1.36
SCN4AP35499 GTF2F2P1-201ENST00000511083 675 ntBASIC6.54□□□□□ -1.36
SCN4AP35499 RN7SKP248-201ENST00000516278 305 ntBASIC6.54□□□□□ -1.36
SCN4AP35499 AP002373.2-201ENST00000541631 1060 ntBASIC6.54□□□□□ -1.36
SCN4AP35499 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.54□□□□□ -1.36
SCN4AP35499 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms