Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 METTL15P3-201ENST00000415522 1221 ntBASIC5.9□□□□□ -1.46
HOXA9P31269 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXA9P31269 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HOXA9P31269 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXA9P31269 AL355032.1-201ENST00000472981 438 ntBASIC5.9□□□□□ -1.46
HOXA9P31269 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HOXA9P31269 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXA9P31269 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXA9P31269 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXA9P31269 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXA9P31269 PGAM1P13-201ENST00000507497 754 ntBASIC5.9□□□□□ -1.46
HOXA9P31269 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.9□□□□□ -1.46
HOXA9P31269 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXA9P31269 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXA9P31269 AC126177.5-201ENST00000549599 178 ntBASIC5.9□□□□□ -1.46
HOXA9P31269 HMGN2P6-201ENST00000551091 273 ntBASIC5.9□□□□□ -1.46
HOXA9P31269 HNRNPCP1-201ENST00000556181 766 ntBASIC5.9□□□□□ -1.46
HOXA9P31269 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXA9P31269 AL121612.2-201ENST00000612261 482 ntBASIC5.9□□□□□ -1.46
HOXA9P31269 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.9□□□□□ -1.46
HOXA9P31269 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.9□□□□□ -1.46
HOXA9P31269 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.9□□□□□ -1.46
HOXA9P31269 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.46
HOXA9P31269 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HOXA9P31269 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.9□□□□□ -1.47
HOXA9P31269 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.9□□□□□ -1.47
HOXA9P31269 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
HOXA9P31269 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.9□□□□□ -1.47
HOXA9P31269 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.9□□□□□ -1.47
HOXA9P31269 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HOXA9P31269 AC005224.3-201ENST00000584683 2140 ntBASIC5.9□□□□□ -1.47
HOXA9P31269 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HOXA9P31269 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HOXA9P31269 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HOXA9P31269 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HOXA9P31269 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HOXA9P31269 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.9□□□□□ -1.47
HOXA9P31269 DNM1P47-203ENST00000571780 12667 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
HOXA9P31269 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
HOXA9P31269 MFSD8-239ENST00000641590 2479 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
HOXA9P31269 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
HOXA9P31269 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXA9P31269 AC021876.1-201ENST00000425959 359 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 AC006455.6-201ENST00000426192 893 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXA9P31269 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXA9P31269 CYCSP6-201ENST00000434498 302 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXA9P31269 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXA9P31269 AL445687.2-201ENST00000458156 728 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 TRBV5-2-201ENST00000489095 273 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 AC002456.2-201ENST00000509356 380 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXA9P31269 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXA9P31269 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXA9P31269 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXA9P31269 AGGF1P7-201ENST00000562369 913 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.89□□□□□ -1.47
HOXA9P31269 AC000068.2-201ENST00000608816 460 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 AC004948.1-201ENST00000609858 672 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 AC025574.2-201ENST00000615621 514 ntBASIC5.89□□□□□ -1.47
HOXA9P31269 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXA9P31269 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXA9P31269 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
HOXA9P31269 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXA9P31269 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXA9P31269 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXA9P31269 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
HOXA9P31269 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXA9P31269 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXA9P31269 RN7SKP6-201ENST00000364795 319 ntBASIC5.88□□□□□ -1.47
HOXA9P31269 GNG5P2-201ENST00000372054 207 ntBASIC5.88□□□□□ -1.47
HOXA9P31269 RN7SKP273-201ENST00000411392 314 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 186.1 ms