Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 ADAMTS4-202ENST00000367996 9773 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 ARID1A-204ENST00000430799 6521 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
COL6A3P12111 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
COL6A3P12111 MECP2-201ENST00000303391 10505 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
COL6A3P12111 ZNF778-207ENST00000620195 11031 ntAPPRIS P3 TSL 2 BASIC5.47□□□□□ -1.53
COL6A3P12111 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL6A3P12111 MIR1182-201ENST00000408363 97 ntBASIC5.47□□□□□ -1.53
COL6A3P12111 RN7SKP106-201ENST00000410832 272 ntBASIC5.47□□□□□ -1.53
COL6A3P12111 H3F3BP1-201ENST00000440551 403 ntBASIC5.47□□□□□ -1.53
COL6A3P12111 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.47□□□□□ -1.53
COL6A3P12111 RPL7L1P3-201ENST00000455249 689 ntBASIC5.47□□□□□ -1.53
COL6A3P12111 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.47□□□□□ -1.53
COL6A3P12111 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.47□□□□□ -1.53
COL6A3P12111 AC005191.1-201ENST00000603950 358 ntBASIC5.47□□□□□ -1.53
COL6A3P12111 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.47□□□□□ -1.53
COL6A3P12111 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL6A3P12111 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
COL6A3P12111 DPY19L1P1-201ENST00000417811 2594 ntBASIC5.46□□□□□ -1.53
COL6A3P12111 ZNF471-201ENST00000308031 6287 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL6A3P12111 PLAC4-201ENST00000623119 5588 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
COL6A3P12111 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL6A3P12111 SACS-202ENST00000402364 15134 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A3P12111 SH3GLB1-203ENST00000535010 6227 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A3P12111 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
COL6A3P12111 U3.35-201ENST00000408405 208 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 CRYBB2P1-203ENST00000415709 538 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.46□□□□□ -1.54
COL6A3P12111 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A3P12111 MTND2P28-201ENST00000457540 1044 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 AC093827.1-201ENST00000480094 861 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 AC105384.2-201ENST00000508433 640 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A3P12111 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 SNX18P1Y-201ENST00000616231 511 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A3P12111 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.46□□□□□ -1.54
COL6A3P12111 MAPK10-323ENST00000641493 3207 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A3P12111 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
COL6A3P12111 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A3P12111 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A3P12111 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A3P12111 CAST-222ENST00000508579 1758 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A3P12111 GPR161-210ENST00000546300 7388 ntTSL 2 BASIC5.46□□□□□ -1.54
COL6A3P12111 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
COL6A3P12111 SNORA63.1-201ENST00000362493 131 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.46□□□□□ -1.54
COL6A3P12111 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.46□□□□□ -1.54
COL6A3P12111 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.46□□□□□ -1.54
COL6A3P12111 CYCSP34-201ENST00000458172 304 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.46□□□□□ -1.54
COL6A3P12111 AP005432.2-201ENST00000608162 586 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 AC039056.2-201ENST00000622261 511 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 MED12-203ENST00000374102 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A3P12111 CASC19-284ENST00000642142 1868 ntBASIC5.46□□□□□ -1.54
COL6A3P12111 DOCK8-209ENST00000469391 6386 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A3P12111 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL6A3P12111 DNAH9-203ENST00000454412 13452 ntTSL 5 BASIC5.46□□□□□ -1.54
COL6A3P12111 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.45□□□□□ -1.54
COL6A3P12111 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL6A3P12111 MIR600-201ENST00000385007 98 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL6A3P12111 ATP5F1P2-201ENST00000398143 760 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A3P12111 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.45□□□□□ -1.54
COL6A3P12111 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.45□□□□□ -1.54
COL6A3P12111 RN7SL352P-201ENST00000466002 277 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 RN7SKP276-201ENST00000516242 268 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 AP003789.1-201ENST00000617737 605 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A3P12111 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A3P12111 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC5.45□□□□□ -1.54
COL6A3P12111 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.45□□□□□ -1.54
COL6A3P12111 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A3P12111 ZBTB40-204ENST00000404138 8992 ntAPPRIS P3 TSL 5 BASIC5.45□□□□□ -1.54
COL6A3P12111 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC5.45□□□□□ -1.54
COL6A3P12111 MYO5A-213ENST00000613858 12139 ntAPPRIS ALT1 TSL 5 BASIC5.45□□□□□ -1.54
COL6A3P12111 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
COL6A3P12111 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
COL6A3P12111 AL358176.3-201ENST00000420757 454 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A3P12111 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A3P12111 SCARNA16.4-201ENST00000516956 187 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.45□□□□□ -1.54
COL6A3P12111 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 AC116631.1-202ENST00000640984 683 ntBASIC5.45□□□□□ -1.54
COL6A3P12111 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL6A3P12111 ZNF608-201ENST00000306315 5958 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms