Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 MIR4260-201ENST00000583107 67 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC009779.8-202ENST00000607990 932 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC108673.3-201ENST00000609183 335 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 AL591926.1-201ENST00000620542 217 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS39Q96JC1 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
VPS39Q96JC1 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VPS39Q96JC1 AC027088.4-201ENST00000611559 1947 ntBASIC5.74□□□□□ -1.49
VPS39Q96JC1 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AL360270.2-201ENST00000562952 5985 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC107021.2-201ENST00000567714 2095 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC097461.1-201ENST00000568928 2821 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 RNFT1P3-201ENST00000340898 1052 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 RN7SKP185-201ENST00000362813 326 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 RNU6-1263P-201ENST00000384601 106 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 MIR130A-201ENST00000385274 89 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 OR10T1P-201ENST00000424327 947 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 GAPDHP48-201ENST00000436626 961 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 ATP5LP2-201ENST00000440646 311 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC023194.2-201ENST00000465398 406 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC107015.1-201ENST00000466902 747 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 AL122020.1-201ENST00000472287 459 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 RPS7P6-201ENST00000485777 579 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 RN7SL57P-201ENST00000493687 290 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 HSD3BP3-201ENST00000514706 994 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC007956.1-201ENST00000555623 542 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 COX6CP7-201ENST00000597056 208 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AL596275.2-207ENST00000641188 675 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 AL606537.1-201ENST00000607258 2011 ntBASIC5.73□□□□□ -1.49
VPS39Q96JC1 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
VPS39Q96JC1 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
VPS39Q96JC1 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS39Q96JC1 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS39Q96JC1 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS39Q96JC1 SAMM50P1-201ENST00000455403 1399 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS39Q96JC1 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 RN7SKP29-201ENST00000410957 272 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 DUTP1-201ENST00000493631 470 ntBASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS39Q96JC1 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms