Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.79□□□□□ -1.32
COL5A3P25940 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC6.79□□□□□ -1.32
COL5A3P25940 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.79□□□□□ -1.32
COL5A3P25940 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL5A3P25940 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.78□□□□□ -1.32
COL5A3P25940 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.78□□□□□ -1.32
COL5A3P25940 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL5A3P25940 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
COL5A3P25940 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.78□□□□□ -1.32
COL5A3P25940 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.78□□□□□ -1.32
COL5A3P25940 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.78□□□□□ -1.32
COL5A3P25940 KRT8P51-201ENST00000438938 274 ntBASIC6.78□□□□□ -1.32
COL5A3P25940 RPL5P22-201ENST00000480199 884 ntBASIC6.78□□□□□ -1.32
COL5A3P25940 PDCL3P4-201ENST00000489621 720 ntBASIC6.78□□□□□ -1.32
COL5A3P25940 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC6.78□□□□□ -1.32
COL5A3P25940 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.78□□□□□ -1.32
COL5A3P25940 AC068790.7-201ENST00000602347 528 ntBASIC6.78□□□□□ -1.32
COL5A3P25940 AC005084.1-201ENST00000605160 304 ntBASIC6.78□□□□□ -1.32
COL5A3P25940 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
COL5A3P25940 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.77□□□□□ -1.33
COL5A3P25940 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.77□□□□□ -1.33
COL5A3P25940 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC6.77□□□□□ -1.33
COL5A3P25940 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.77□□□□□ -1.33
COL5A3P25940 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.77□□□□□ -1.33
COL5A3P25940 AL078599.1-201ENST00000402075 293 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 AC019050.1-201ENST00000418508 492 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 RNF10P1-201ENST00000418589 369 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 CRIP1P1-201ENST00000427567 185 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 AC091390.1-201ENST00000433904 331 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 AL049745.1-201ENST00000433953 286 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 KNOP1P3-201ENST00000446933 426 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 snoU13.20-201ENST00000459180 104 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.77□□□□□ -1.33
COL5A3P25940 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 AC009597.2-201ENST00000604659 592 ntBASIC6.77□□□□□ -1.33
COL5A3P25940 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC6.77□□□□□ -1.33
COL5A3P25940 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.77□□□□□ -1.33
COL5A3P25940 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL5A3P25940 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.76□□□□□ -1.33
COL5A3P25940 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.76□□□□□ -1.33
COL5A3P25940 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 MIR192-201ENST00000384915 110 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.76□□□□□ -1.33
COL5A3P25940 EIF2S2P3-201ENST00000428356 999 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AL138878.2-201ENST00000440581 1241 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.76□□□□□ -1.33
COL5A3P25940 AC092905.1-201ENST00000467527 949 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.76□□□□□ -1.33
COL5A3P25940 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC6.76□□□□□ -1.33
COL5A3P25940 AC122688.1-201ENST00000541494 223 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.76□□□□□ -1.33
COL5A3P25940 AL031320.1-201ENST00000604177 357 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AL731566.2-201ENST00000618971 317 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AC099494.2-201ENST00000623371 978 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
COL5A3P25940 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.76□□□□□ -1.33
COL5A3P25940 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.76□□□□□ -1.33
COL5A3P25940 AC073648.4-201ENST00000442655 781 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 RPS29P33-201ENST00000456717 146 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 RN7SL188P-201ENST00000469842 285 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.76□□□□□ -1.33
COL5A3P25940 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC6.76□□□□□ -1.33
COL5A3P25940 OR7H2P-201ENST00000513483 306 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC6.76□□□□□ -1.33
COL5A3P25940 snoU109.5-201ENST00000516231 132 ntBASIC6.76□□□□□ -1.33
COL5A3P25940 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.76□□□□□ -1.33
COL5A3P25940 RPL27-207ENST00000590864 569 ntTSL 2 BASIC6.76□□□□□ -1.33
COL5A3P25940 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL5A3P25940 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC6.75□□□□□ -1.33
COL5A3P25940 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC6.75□□□□□ -1.33
COL5A3P25940 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 AC126755.2-208ENST00000327792 462 ntBASIC6.75□□□□□ -1.33
COL5A3P25940 AC138969.1-213ENST00000331436 462 ntBASIC6.75□□□□□ -1.33
COL5A3P25940 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.75□□□□□ -1.33
COL5A3P25940 AC245028.1-201ENST00000423259 256 ntBASIC6.75□□□□□ -1.33
COL5A3P25940 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC6.75□□□□□ -1.33
COL5A3P25940 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.75□□□□□ -1.33
COL5A3P25940 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.75□□□□□ -1.33
COL5A3P25940 NDUFA5P8-201ENST00000449019 346 ntBASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 195.3 ms