Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.77□□□□□ -1.33
UPF3BQ9BZI7 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 RNA5SP453-201ENST00000362503 119 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 RN7SKP293-201ENST00000411389 296 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 SDHDP6-201ENST00000414693 480 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 RPS23P2-201ENST00000463671 415 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AC108043.1-201ENST00000512696 574 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 SMARCE1P3-201ENST00000553649 1231 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 FAM27E4-201ENST00000605259 342 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AC092944.2-201ENST00000605443 889 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 NANOGP3-201ENST00000605855 286 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 GTF2IP4-201ENST00000453092 2054 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AC023632.6-201ENST00000624338 2177 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 AL355488.2-201ENST00000609909 2850 ntBASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
UPF3BQ9BZI7 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 RNF19BPY-201ENST00000458209 1550 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 RN7SKP286-201ENST00000410894 299 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 BX276092.6-201ENST00000430476 250 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AC138761.5-201ENST00000433967 325 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 HMGN1P36-201ENST00000446623 298 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 BX276092.8-201ENST00000455722 250 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 RPSAP39-201ENST00000467439 883 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AC111000.6-201ENST00000514471 709 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 IGLV3-24-201ENST00000517477 197 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AC079600.1-201ENST00000550326 297 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AGGF1P7-201ENST00000562369 913 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 MIR4700-201ENST00000578311 74 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 AL031658.2-201ENST00000616850 651 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 PWAR1-201ENST00000624188 2414 ntBASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
UPF3BQ9BZI7 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 HSPD1P7-201ENST00000447985 1686 ntBASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 AC109446.4-201ENST00000623235 2755 ntBASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 MIR1203-201ENST00000408812 85 ntBASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 AL513325.1-201ENST00000417716 1034 ntBASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 OR10T1P-201ENST00000424327 947 ntBASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 RPS17P5-201ENST00000498293 408 ntBASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 SCARNA6.1-201ENST00000516989 238 ntBASIC6.74□□□□□ -1.33
UPF3BQ9BZI7 AC021678.3-201ENST00000517893 476 ntBASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms