Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 HYALP1-201ENST00000417674 1279 ntBASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 UBFD1P1-201ENST00000473259 814 ntBASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC021006.1-201ENST00000489849 553 ntBASIC5.98□□□□□ -1.45
CCDC42Q96M95 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 HSD3BP3-201ENST00000514706 994 ntBASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC090286.3-201ENST00000573133 187 ntBASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC42Q96M95 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC42Q96M95 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 AC005261.2-201ENST00000593427 4258 ntBASIC5.97□□□□□ -1.45
CCDC42Q96M95 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 RN7SKP81-201ENST00000365603 331 ntBASIC5.97□□□□□ -1.45
CCDC42Q96M95 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 PPIAP9-201ENST00000403866 498 ntBASIC5.97□□□□□ -1.45
CCDC42Q96M95 RPSAP35-201ENST00000413753 818 ntBASIC5.97□□□□□ -1.45
CCDC42Q96M95 MGAT2P2-201ENST00000427194 797 ntBASIC5.97□□□□□ -1.45
CCDC42Q96M95 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 AC068228.1-201ENST00000461723 211 ntBASIC5.97□□□□□ -1.45
CCDC42Q96M95 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 CASC19-274ENST00000642018 970 ntBASIC5.97□□□□□ -1.45
CCDC42Q96M95 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC42Q96M95 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC42Q96M95 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC42Q96M95 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC42Q96M95 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.96□□□□□ -1.45
CCDC42Q96M95 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.96□□□□□ -1.45
CCDC42Q96M95 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC42Q96M95 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC42Q96M95 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC42Q96M95 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC42Q96M95 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC42Q96M95 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC42Q96M95 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC42Q96M95 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC42Q96M95 RNA5SP241-201ENST00000391326 114 ntBASIC5.96□□□□□ -1.46
CCDC42Q96M95 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 NDUFS5P5-201ENST00000437256 321 ntBASIC5.96□□□□□ -1.46
CCDC42Q96M95 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 AC019322.1-201ENST00000571869 389 ntBASIC5.96□□□□□ -1.46
CCDC42Q96M95 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.96□□□□□ -1.46
CCDC42Q96M95 AC100757.1-201ENST00000616872 1835 ntBASIC5.96□□□□□ -1.46
CCDC42Q96M95 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC42Q96M95 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC42Q96M95 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 AL078621.3-201ENST00000623707 2042 ntBASIC5.96□□□□□ -1.46
CCDC42Q96M95 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC42Q96M95 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC42Q96M95 AL031595.2-201ENST00000624215 19071 ntBASIC5.95□□□□□ -1.46
CCDC42Q96M95 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms