Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC9.1□□□□□ -0.95
CUX1P39880 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC9.1□□□□□ -0.95
CUX1P39880 AL133406.3-201ENST00000606817 541 ntBASIC9.1□□□□□ -0.95
CUX1P39880 AC135068.5-201ENST00000624197 983 ntBASIC9.1□□□□□ -0.95
CUX1P39880 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC9.1□□□□□ -0.95
CUX1P39880 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC9.1□□□□□ -0.95
CUX1P39880 AP004289.1-201ENST00000436307 2205 ntBASIC9.1□□□□□ -0.95
CUX1P39880 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC9.1□□□□□ -0.95
CUX1P39880 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC9.1□□□□□ -0.95
CUX1P39880 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
CUX1P39880 AL353796.1-201ENST00000561542 3241 ntBASIC9.1□□□□□ -0.95
CUX1P39880 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC9.1□□□□□ -0.95
CUX1P39880 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 AC126755.2-208ENST00000327792 462 ntBASIC9.1□□□□□ -0.95
CUX1P39880 AC138969.1-213ENST00000331436 462 ntBASIC9.1□□□□□ -0.95
CUX1P39880 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 RNA5SP251-201ENST00000410614 137 ntBASIC9.1□□□□□ -0.95
CUX1P39880 DDX39BP1-205ENST00000422507 192 ntBASIC9.1□□□□□ -0.95
CUX1P39880 RN7SL738P-201ENST00000470264 297 ntBASIC9.1□□□□□ -0.95
CUX1P39880 RN7SL459P-201ENST00000481078 302 ntBASIC9.1□□□□□ -0.95
CUX1P39880 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC9.1□□□□□ -0.95
CUX1P39880 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 DUBR-205ENST00000495228 411 ntTSL 2 BASIC9.1□□□□□ -0.95
CUX1P39880 CEACAMP10-202ENST00000495431 496 ntBASIC9.1□□□□□ -0.95
CUX1P39880 AC021106.1-201ENST00000509020 1058 ntBASIC9.1□□□□□ -0.95
CUX1P39880 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC9.1□□□□□ -0.95
CUX1P39880 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC9.1□□□□□ -0.95
CUX1P39880 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC9.1□□□□□ -0.95
CUX1P39880 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
CUX1P39880 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
CUX1P39880 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CUX1P39880 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
CUX1P39880 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC9.09□□□□□ -0.95
CUX1P39880 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CUX1P39880 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC9.09□□□□□ -0.95
CUX1P39880 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
CUX1P39880 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC9.09□□□□□ -0.95
CUX1P39880 U3.3-201ENST00000362986 216 ntBASIC9.09□□□□□ -0.95
CUX1P39880 ADIG-201ENST00000373348 430 ntTSL 2 BASIC9.09□□□□□ -0.95
CUX1P39880 AL078599.1-201ENST00000402075 293 ntBASIC9.09□□□□□ -0.95
CUX1P39880 SNORA11-201ENST00000408789 128 ntBASIC9.09□□□□□ -0.95
CUX1P39880 CRIP1P1-201ENST00000427567 185 ntBASIC9.09□□□□□ -0.95
CUX1P39880 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC9.09□□□□□ -0.95
CUX1P39880 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC9.09□□□□□ -0.95
CUX1P39880 CEACAMP9-201ENST00000442990 513 ntBASIC9.09□□□□□ -0.95
CUX1P39880 RPL5P22-201ENST00000480199 884 ntBASIC9.09□□□□□ -0.95
CUX1P39880 ATP5LP5-201ENST00000483050 299 ntBASIC9.09□□□□□ -0.95
CUX1P39880 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC9.09□□□□□ -0.95
CUX1P39880 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC9.09□□□□□ -0.95
CUX1P39880 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC9.09□□□□□ -0.95
CUX1P39880 MTCO1P1-201ENST00000624263 1081 ntBASIC9.09□□□□□ -0.95
CUX1P39880 TTC3P1-201ENST00000399586 6081 ntBASIC9.09□□□□□ -0.95
CUX1P39880 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
CUX1P39880 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC9.09□□□□□ -0.95
CUX1P39880 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.96
CUX1P39880 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC9.08□□□□□ -0.96
CUX1P39880 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC9.08□□□□□ -0.96
CUX1P39880 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC9.08□□□□□ -0.96
CUX1P39880 AC026951.1-201ENST00000559530 2459 ntBASIC9.08□□□□□ -0.96
CUX1P39880 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC9.08□□□□□ -0.96
CUX1P39880 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX1P39880 AL359195.2-201ENST00000623657 4412 ntBASIC9.08□□□□□ -0.96
CUX1P39880 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX1P39880 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
CUX1P39880 RN7SKP113-201ENST00000363891 295 ntBASIC9.08□□□□□ -0.96
CUX1P39880 RNU1-136P-201ENST00000384181 164 ntBASIC9.08□□□□□ -0.96
CUX1P39880 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC9.08□□□□□ -0.96
CUX1P39880 AC016397.1-201ENST00000412463 242 ntBASIC9.08□□□□□ -0.96
CUX1P39880 COX6B1P1-201ENST00000415962 213 ntBASIC9.08□□□□□ -0.96
CUX1P39880 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC9.08□□□□□ -0.96
CUX1P39880 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC9.08□□□□□ -0.96
CUX1P39880 RPL31P44-201ENST00000447680 377 ntBASIC9.08□□□□□ -0.96
CUX1P39880 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC9.08□□□□□ -0.96
CUX1P39880 AC058823.1-201ENST00000485315 474 ntBASIC9.08□□□□□ -0.96
CUX1P39880 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC9.08□□□□□ -0.96
CUX1P39880 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC9.08□□□□□ -0.96
CUX1P39880 YWHABP2-201ENST00000540201 713 ntBASIC9.08□□□□□ -0.96
CUX1P39880 PCNPP1-201ENST00000552501 511 ntBASIC9.08□□□□□ -0.96
CUX1P39880 AC005341.1-201ENST00000571086 708 ntBASIC9.08□□□□□ -0.96
CUX1P39880 RN7SL356P-201ENST00000582228 248 ntBASIC9.08□□□□□ -0.96
CUX1P39880 MIR4697-201ENST00000582977 78 ntBASIC9.08□□□□□ -0.96
CUX1P39880 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC9.08□□□□□ -0.96
CUX1P39880 AC015660.5-201ENST00000623238 564 ntBASIC9.08□□□□□ -0.96
CUX1P39880 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC9.08□□□□□ -0.96
CUX1P39880 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC9.08□□□□□ -0.96
CUX1P39880 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC9.08□□□□□ -0.96
CUX1P39880 AC005725.1-201ENST00000577346 2607 ntBASIC9.08□□□□□ -0.96
CUX1P39880 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX1P39880 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC9.08□□□□□ -0.96
CUX1P39880 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
CUX1P39880 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC9.07□□□□□ -0.96
CUX1P39880 AC068870.1-201ENST00000563737 2455 ntBASIC9.07□□□□□ -0.96
CUX1P39880 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC9.07□□□□□ -0.96
CUX1P39880 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC9.07□□□□□ -0.96
CUX1P39880 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC9.07□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms